PDB entry 1nd3
View 1nd3 on RCSB PDB site
Description: The structure of HRV16, when complexed with pleconaril, an antiviral compound
Class: Virus
Keywords: HRV16, rhinovirus, piconaviridae, pleconaril, Icosahedral virus
Deposited on
2002-12-06, released
2003-12-16
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.247
AEROSPACI score: 0.23
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: coat protein vp1
Species: Human rhinovirus 16 [TaxId:31708]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1nd3a_ - Chain 'B':
Compound: coat protein vp2
Species: Human rhinovirus 16 [TaxId:31708]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1nd3.1 - Chain 'C':
Compound: coat protein vp3
Species: Human rhinovirus 16 [TaxId:31708]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1nd3c_ - Chain 'D':
Compound: coat protein vp4
Species: Human rhinovirus 16 [TaxId:31708]
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d1nd3.1 - Heterogens: ZN, W11, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence; same for both SEQRES and ATOM records: (download)
>1nd3A (A:)
npveryvdevlnevlvvpninqshpttsnaapvldaaetghtnkiqpedtietryvqssq
tldemsvesflgrsgcihesvldivdnyndqsftkwninlqemaqirrkfemftyarfds
eitmvpsvaakdghighivmqymyvppgapipttrddyawqsgtnasvfwqhgqpfprfs
lpflsiasayymfydgydgdtyksrygtvvtndmgtlcsrivtseqlhkvkvvtriyhka
khtkawcprppravqyshthttnyklssevhndvairprtnlttv
- Chain 'B':
Sequence, based on SEQRES records: (download)
>1nd3B (B:)
spsveacgysdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtss
nrfytldskmwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqg
tllvvmipehqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllg
nllifphqfinlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpi
tvsispmcaefsgaraktvvq
Sequence, based on observed residues (ATOM records): (download)
>1nd3B (B:)
sdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtssnrfytldsk
mwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqgtllvvmipe
hqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllgnllifphqf
inlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpitvsispmca
efsgaraktvvq
- Chain 'C':
Sequence; same for both SEQRES and ATOM records: (download)
>1nd3C (C:)
glpvyvtpgsgqfmttddmqspcalpwyhptkeifipgevknliemcqvdtlipinstqs
nignvsmytvtlspqtklaeeifaikvdiashplattligeiasyfthwtgslrfsfmfc
gtanttlkvllaytppgigkprsrkeamlgthvvwdvglqstvslvvpwisasqyrfttp
dtyssagyitcwyqtnfvvppntpntaemlcfvsgckdfclrmardtdlhkqtgpitq
- Chain 'D':
Sequence, based on SEQRES records: (download)
>1nd3D (D:)
gaqvsrqnvgthstqnmvsngssinyfninyfkdaassgasrldfsqdpskftdpvkdvl
ekgiptlq
Sequence, based on observed residues (ATOM records): (download)
>1nd3D (D:)
gaqvsrqsinyfninyfkdaassgasrld