PDB entry 1nd3

View 1nd3 on RCSB PDB site
Description: The structure of HRV16, when complexed with pleconaril, an antiviral compound
Class: Virus
Keywords: HRV16, rhinovirus, piconaviridae, pleconaril, Icosahedral virus
Deposited on 2002-12-06, released 2003-12-16
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-02-24, with a file datestamp of 2009-03-01.
Experiment type: XRAY
Resolution: 2.8 Å
R-factor: 0.247
AEROSPACI score: 0.23 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: coat protein vp1
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1nd3a_
  • Chain 'B':
    Compound: coat protein vp2
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1nd3.1
  • Chain 'C':
    Compound: coat protein vp3
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d1nd3c_
  • Chain 'D':
    Compound: coat protein vp4
    Species: Human rhinovirus 16 [TaxId:31708]
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q82122 (0-End)
      • see remark 999 (23)
    Domains in SCOPe 2.08: d1nd3.1
  • Heterogens: ZN, W11, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1nd3A (A:)
    npveryvdevlnevlvvpninqshpttsnaapvldaaetghtnkiqpedtietryvqssq
    tldemsvesflgrsgcihesvldivdnyndqsftkwninlqemaqirrkfemftyarfds
    eitmvpsvaakdghighivmqymyvppgapipttrddyawqsgtnasvfwqhgqpfprfs
    lpflsiasayymfydgydgdtyksrygtvvtndmgtlcsrivtseqlhkvkvvtriyhka
    khtkawcprppravqyshthttnyklssevhndvairprtnlttv
    

  • Chain 'B':
    Sequence, based on SEQRES records: (download)
    >1nd3B (B:)
    spsveacgysdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtss
    nrfytldskmwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqg
    tllvvmipehqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllg
    nllifphqfinlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpi
    tvsispmcaefsgaraktvvq
    

    Sequence, based on observed residues (ATOM records): (download)
    >1nd3B (B:)
    sdriiqitrgdstitsqdvanavvgygvwphyltpqdataidkptqpdtssnrfytldsk
    mwnstskgwwwklpdalkdmgifgenmfyhflgrsgytvhvqcnaskfhqgtllvvmipe
    hqlatvnkgnvnagykythpgeagrevgtqvenekqpsddnwlnfdgtllgnllifphqf
    inlrsnnsatlivpyvnavpmdsmvrhnnwslviipvcqlqsnnisnivpitvsispmca
    efsgaraktvvq
    

  • Chain 'C':
    Sequence; same for both SEQRES and ATOM records: (download)
    >1nd3C (C:)
    glpvyvtpgsgqfmttddmqspcalpwyhptkeifipgevknliemcqvdtlipinstqs
    nignvsmytvtlspqtklaeeifaikvdiashplattligeiasyfthwtgslrfsfmfc
    gtanttlkvllaytppgigkprsrkeamlgthvvwdvglqstvslvvpwisasqyrfttp
    dtyssagyitcwyqtnfvvppntpntaemlcfvsgckdfclrmardtdlhkqtgpitq
    

  • Chain 'D':
    Sequence, based on SEQRES records: (download)
    >1nd3D (D:)
    gaqvsrqnvgthstqnmvsngssinyfninyfkdaassgasrldfsqdpskftdpvkdvl
    ekgiptlq
    

    Sequence, based on observed residues (ATOM records): (download)
    >1nd3D (D:)
    gaqvsrqsinyfninyfkdaassgasrld