Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. Fold d.118: N-acetylmuramoyl-L-alanine amidase-like [55845] (1 superfamily)
    contains mixed beta-sheet
  4. Superfamily d.118.1: N-acetylmuramoyl-L-alanine amidase-like [55846] (2 families) (S)
  5. Family d.118.1.0: automated matches [191348] (1 protein)
    not a true family
  6. Protein automated matches [190280] (10 species)
    not a true protein

Species:

  1. Alvinella pompejana [TaxId:6376] [232063] (1 PDB entry)
  2. Honeybee (Apis mellifera) [TaxId:7460] [355009] (1 PDB entry)
  3. Bacillus subtilis [TaxId:1423] [189356] (3 PDB entries)
    1. Domains for 3hma:
      1. Domain d3hmaa_: 3hma A: [305516]
        automated match to d3hmbb_
        complexed with zn
      2. Domain d3hmab_: 3hma B: [305517]
        automated match to d3hmbb_
        complexed with zn
    2. Domains for 3hmb:
      1. Domain d3hmba_: 3hmb A: [177692]
        Other proteins in same PDB: d3hmbb2
        automated match to d1yb0a1
        complexed with zn; mutant
      2. Domain d3hmbb1: 3hmb B:1-154 [177693]
        Other proteins in same PDB: d3hmbb2
        automated match to d1yb0a1
        complexed with zn; mutant
      3. Domain d3hmbc_: 3hmb C: [177694]
        Other proteins in same PDB: d3hmbb2
        automated match to d1yb0a1
        complexed with zn; mutant
    3. Domain for 3rdr:
  4. Branchiostoma belcheri [TaxId:155462] [278267] (1 PDB entry)
  5. Clostridium intestinale [TaxId:1294142] [391541] (1 PDB entry)
  6. Clostridium intestinale [TaxId:36845] [391713] (1 PDB entry)
  7. Fruit fly (Drosophila melanogaster) [TaxId:7227] [187079] (3 PDB entries)
    1. Domain for 2f2l:
    2. Domain for 2rkq:
    3. Domains for 2xz4:
      1. Domain d2xz4a_: 2xz4 A: [170492]
        automated match to d2f2lx1
        complexed with 1pg, cu, edo
      2. Domain d2xz4b_: 2xz4 B: [170493]
        automated match to d2f2lx1
        complexed with 1pg, cu, edo
  8. Tobacco hornworm (Manduca sexta) [TaxId:7130] [369611] (1 PDB entry)
  9. Thermus phage [TaxId:1542447] [363153] (1 PDB entry)
  10. Thermus phage [TaxId:1442384] [420061] (1 PDB entry)

More info for Protein automated matches from d.118.1.0: automated matches

Timeline for Protein automated matches from d.118.1.0: automated matches: