PDB entry 3ep1

View 3ep1 on RCSB PDB site
Description: Structure of the PGRP-Hd from Alvinella pompejana
Class: immune system
Keywords: PGRP-Hd, Alvinella pompejana, immune system, thermophile, model system
Deposited on 2008-09-29, released 2009-09-29
The last revision prior to the SCOPe 2.08 freeze date was dated 2009-09-29, with a file datestamp of 2009-09-25.
Experiment type: XRAY
Resolution: 2.1 Å
R-factor: 0.247
AEROSPACI score: 0.37 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: PGRP-Hd - Peptidoglycan recognition protein homologue
    Species: Alvinella pompejana [TaxId:6376]
    Gene: PGRP-Hd
    Database cross-references and differences (RAF-indexed):
    • PDB 3EPI (0-End)
    Domains in SCOPe 2.08: d3ep1a_
  • Chain 'B':
    Compound: PGRP-Hd - Peptidoglycan recognition protein homologue
    Species: Alvinella pompejana [TaxId:6376]
    Gene: PGRP-Hd
    Database cross-references and differences (RAF-indexed):
    • PDB 3EPI (0-End)
    Domains in SCOPe 2.08: d3ep1b_
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ep1A (A:)
ladsivprqqwaaieprrqikmngradeiflwqtgpdtcslmgltadkcqgclqdsscte
qivkalqdadfkegnddikynflidqdgviyegrgwgvvgqhtkgrdshsigvavigdfg
kkepsqalqdalskliicgqaaeelssgarlrttpamsgqafydmldrcdglcldd

    Sequence, based on observed residues (ATOM records): (download) 
    >3ep1A (A:)
ladsivprqqwaaieprrqikmngradeiflwqtgpdtcslmggclqdsscteqivkalq
dadfkegnddikynflidqdgviyegrgwgvvgqhtkgrdshsigvavigdfgkkepsqa
lqdalskliicgqaaeelssgarlrttpamsgqafydmldrcdglcl

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >3ep1B (B:)
ladsivprqqwaaieprrqikmngradeiflwqtgpdtcslmgltadkcqgclqdsscte
qivkalqdadfkegnddikynflidqdgviyegrgwgvvgqhtkgrdshsigvavigdfg
kkepsqalqdalskliicgqaaeelssgarlrttpamsgqafydmldrcdglcldd

    Sequence, based on observed residues (ATOM records): (download) 
    >3ep1B (B:)
ladsivprqqwaaieprrqikmngradeiflwqtgpdtcsgclqdsscteqivkalqdad
fkegnddikynflidqdgviyegrgwgvvgqhtkgrdshsigvavigdfgkkepsqalqd
alskliicgqaaeelssgarlrttpamsgqafydmldrcdglcl