SCOPe 2.08: Protein: Exonuclease domain of phi29 DNA polymerase

Lineage for Protein: Exonuclease domain of phi29 DNA polymerase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
Superfamily c.55.3: Ribonuclease H-like [53098] (18 families)
consists of one domain of this fold
Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 proteins)
contains Pfam PF00929
Protein Exonuclease domain of phi29 DNA polymerase [117650] (1 species)

Species:

Bacteriophage phi-29 [TaxId:10756] [117651] (8 PDB entries)
Uniprot P03680

Domains for 1xhx:
1. Domain d1xhxa1: 1xhx A:5-187 [115305]
  Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
  complexed with mg, so4
2. Domain d1xhxb1: 1xhx B:5-187 [197642]
  Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
  automated match to d1xhxa1
  complexed with mg, so4
3. Domain d1xhxc1: 1xhx C:5-187 [197644]
  Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
  automated match to d1xhxa1
  complexed with mg, so4
4. Domain d1xhxd1: 1xhx D:5-187 [197646]
  Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
  automated match to d1xhxa1
  complexed with mg, so4
Domains for 1xhz:
1. Domain d1xhza1: 1xhz A:5-187 [115307]
  Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
  protein/DNA complex
2. Domain d1xhzb1: 1xhz B:5-187 [197648]
  Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
  automated match to d1xhxa1
  protein/DNA complex
3. Domain d1xhzc1: 1xhz C:5-187 [197650]
  Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
  automated match to d1xhxa1
  protein/DNA complex
4. Domain d1xhzd1: 1xhz D:5-187 [197652]
  Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
  automated match to d1xhxa1
  protein/DNA complex
Domains for 1xi1:
1. Domain d1xi1a1: 1xi1 A:5-187 [115309]
  Other proteins in same PDB: d1xi1a2, d1xi1b2
  protein/DNA complex; complexed with mg
2. Domain d1xi1b1: 1xi1 B:5-187 [197654]
  Other proteins in same PDB: d1xi1a2, d1xi1b2
  automated match to d1xhxa1
  protein/DNA complex; complexed with mg

Domains for 2ex3:

Domain d2ex3a1: 2ex3 A:6-187 [132498]
Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
protein/DNA complex; complexed with pb

Domain d2ex3c1: 2ex3 C:6-187 [132501]
Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
automated match to d2py5a1
protein/DNA complex; complexed with pb

Domain d2ex3e1: 2ex3 E:6-187 [132504]
Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
automated match to d2py5a1
protein/DNA complex; complexed with pb

Domain d2ex3g1: 2ex3 G:6-187 [132507]
Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
automated match to d2py5a1
protein/DNA complex; complexed with pb

Domain d2ex3i1: 2ex3 I:6-187 [132510]
Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
automated match to d2py5a1
protein/DNA complex; complexed with pb

Domain d2ex3k1: 2ex3 K:6-187 [132513]
Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
automated match to d2py5a1
protein/DNA complex; complexed with pb

Domains for 2py5:
1. Domain d2py5a1: 2py5 A:5-187 [149928]
  Other proteins in same PDB: d2py5a2, d2py5b2
  automated match to d1xhxa1
  protein/DNA complex; complexed with edo
2. Domain d2py5b1: 2py5 B:5-187 [149930]
  Other proteins in same PDB: d2py5a2, d2py5b2
  automated match to d1xhxa1
  protein/DNA complex; complexed with edo
Domains for 2pyj:
1. Domain d2pyja1: 2pyj A:5-187 [149943]
  Other proteins in same PDB: d2pyja2, d2pyjb2
  automated match to d1xhxa1
  protein/DNA complex; complexed with dgt, edo, mg, mn
2. Domain d2pyjb1: 2pyj B:3-187 [149945]
  Other proteins in same PDB: d2pyja2, d2pyjb2
  automated match to d1xhxa1
  protein/DNA complex; complexed with dgt, edo, mg, mn
Domain for 2pyl:
- Domain d2pyla1: 2pyl A:5-187 [149947]
  Other proteins in same PDB: d2pyla2
  automated match to d1xhxa1
  protein/DNA complex; complexed with edo, mg, ttp
Domains for 2pzs:
1. Domain d2pzsa1: 2pzs A:5-187 [149965]
  Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
  automated match to d1xhxa1
  protein/DNA complex
2. Domain d2pzsb1: 2pzs B:5-187 [149967]
  Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
  automated match to d1xhxa1
  protein/DNA complex
3. Domain d2pzsc1: 2pzs C:5-187 [149969]
  Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
  automated match to d1xhxa1
  protein/DNA complex
4. Domain d2pzsd1: 2pzs D:5-187 [149971]
  Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
  automated match to d1xhxa1
  protein/DNA complex

More info for Protein Exonuclease domain of phi29 DNA polymerase from c.55.3.5: DnaQ-like 3'-5' exonuclease

Timeline for Protein Exonuclease domain of phi29 DNA polymerase from c.55.3.5: DnaQ-like 3'-5' exonuclease:

Protein Exonuclease domain of phi29 DNA polymerase from c.55.3.5: DnaQ-like 3'-5' exonuclease first appeared in SCOP 1.71
Protein Exonuclease domain of phi29 DNA polymerase from c.55.3.5: DnaQ-like 3'-5' exonuclease appears in SCOPe 2.07