Lineage for d2pyja2 (2pyj A:188-575)

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3016464Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 3016465Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 3016466Family e.8.1.1: DNA polymerase I [56673] (5 proteins)
    in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
  6. 3016714Protein phi29 DNA polymerase [118193] (1 species)
  7. 3016715Species Bacteriophage phi-29 [TaxId:10756] [118194] (8 PDB entries)
    Uniprot P03680
  8. 3016723Domain d2pyja2: 2pyj A:188-575 [149944]
    Other proteins in same PDB: d2pyja1, d2pyjb1
    automated match to d1xhxa2
    protein/DNA complex; complexed with dgt, edo, mg, mn

Details for d2pyja2

PDB Entry: 2pyj (more details), 2.03 Å

PDB Description: phi29 dna polymerase complexed with primer-template dna and incoming nucleotide substrates (ternary complex)
PDB Compounds: (A:) DNA polymerase

SCOPe Domain Sequences for d2pyja2:

Sequence, based on SEQRES records: (download)

>d2pyja2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}
mtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeigegmv
fdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqikrs
rfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkw
tyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvyt
pmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahes
tfkrakylrqktyiqdiymkevdgklvegspddytdikfsvkcagmtdkikkevtfenfk
vgfsrkmkpkpvqvpggvvlvddtftik

Sequence, based on observed residues (ATOM records): (download)

>d2pyja2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]}
mtagsdslkgfkdiittkkfkkvfptlslgldkevryayrggftwlndrfkekeigegmv
fdvnslypaqmysrllpygepivfegkyvwdedyplhiqhircefelkegyiptiqikrs
rfykgneylkssggeiadlwlsnvdlelmkehydlynveyisglkfkattglfkdfidkw
tyikttsegaikqlaklmlnslygkfasnpdvtgkvpylkengalgfrlgeeetkdpvyt
pmgvfitawaryttitaaqacydriiycdtdsihltgteipdvikdivdpkklgywahes
tfkrakylrqktyiqdiymkevvegspddytdikfsvkcagmtdkikkevtfenfkvgfs
rkmkpkpvqvpggvvlvddtftik

SCOPe Domain Coordinates for d2pyja2:

Click to download the PDB-style file with coordinates for d2pyja2.
(The format of our PDB-style files is described here.)

Timeline for d2pyja2:

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Domains from same chain:
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d2pyja1