Lineage for Species: Bacteriophage phi-29 [TaxId: 10756]

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2122050Fold c.55: Ribonuclease H-like motif [53066] (7 superfamilies)
    3 layers: a/b/a; mixed beta-sheet of 5 strands, order 32145; strand 2 is antiparallel to the rest
  4. 2123751Superfamily c.55.3: Ribonuclease H-like [53098] (15 families) (S)
    consists of one domain of this fold
  5. 2124334Family c.55.3.5: DnaQ-like 3'-5' exonuclease [53118] (17 protein domains)
    contains Pfam PF00929
  6. 2124498Protein Exonuclease domain of phi29 DNA polymerase [117650] (1 species)
  7. 2124499Species Bacteriophage phi-29 [TaxId:10756] [117651] (8 PDB entries)
    Uniprot P03680

PDB entries in Species: Bacteriophage phi-29 [TaxId: 10756]:

  1. Domain(s) for 1xhx:
    1. 2124505Domain d1xhxa1: 1xhx A:5-187 [115305]
      Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
      complexed with mg, so4
    2. 2124506Domain d1xhxb1: 1xhx B:5-187 [197642]
      Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
      automated match to d1xhxa1
      complexed with mg, so4
    3. 2124507Domain d1xhxc1: 1xhx C:5-187 [197644]
      Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
      automated match to d1xhxa1
      complexed with mg, so4
    4. 2124508Domain d1xhxd1: 1xhx D:5-187 [197646]
      Other proteins in same PDB: d1xhxa2, d1xhxb2, d1xhxc2, d1xhxd2
      automated match to d1xhxa1
      complexed with mg, so4
  2. Domain(s) for 1xhz:
    1. 2124515Domain d1xhza1: 1xhz A:5-187 [115307]
      Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
      protein/DNA complex
    2. 2124516Domain d1xhzb1: 1xhz B:5-187 [197648]
      Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
      automated match to d1xhxa1
      protein/DNA complex
    3. 2124517Domain d1xhzc1: 1xhz C:5-187 [197650]
      Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
      automated match to d1xhxa1
      protein/DNA complex
    4. 2124518Domain d1xhzd1: 1xhz D:5-187 [197652]
      Other proteins in same PDB: d1xhza2, d1xhzb2, d1xhzc2, d1xhzd2
      automated match to d1xhxa1
      protein/DNA complex
  3. Domain(s) for 1xi1:
    1. 2124509Domain d1xi1a1: 1xi1 A:5-187 [115309]
      Other proteins in same PDB: d1xi1a2, d1xi1b2
      protein/DNA complex; complexed with mg
    2. 2124510Domain d1xi1b1: 1xi1 B:5-187 [197654]
      Other proteins in same PDB: d1xi1a2, d1xi1b2
      automated match to d1xhxa1
      protein/DNA complex; complexed with mg
  4. Domain(s) for 2ex3:
    1. 2124519Domain d2ex3a1: 2ex3 A:6-187 [132498]
      Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
      protein/DNA complex; complexed with pb
    2. 2124520Domain d2ex3c1: 2ex3 C:6-187 [132501]
      Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
      automated match to d2py5a1
      protein/DNA complex; complexed with pb
    3. 2124521Domain d2ex3e1: 2ex3 E:6-187 [132504]
      Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
      automated match to d2py5a1
      protein/DNA complex; complexed with pb
    4. 2124522Domain d2ex3g1: 2ex3 G:6-187 [132507]
      Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
      automated match to d2py5a1
      protein/DNA complex; complexed with pb
    5. 2124523Domain d2ex3i1: 2ex3 I:6-187 [132510]
      Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
      automated match to d2py5a1
      protein/DNA complex; complexed with pb
    6. 2124524Domain d2ex3k1: 2ex3 K:6-187 [132513]
      Other proteins in same PDB: d2ex3a2, d2ex3b1, d2ex3c2, d2ex3d1, d2ex3e2, d2ex3f1, d2ex3g2, d2ex3h1, d2ex3i2, d2ex3j1, d2ex3k2, d2ex3l1
      automated match to d2py5a1
      protein/DNA complex; complexed with pb
  5. Domain(s) for 2py5:
    1. 2124500Domain d2py5a1: 2py5 A:5-187 [149928]
      Other proteins in same PDB: d2py5a2, d2py5b2
      automated match to d1xhxa1
      protein/DNA complex; complexed with edo
    2. 2124501Domain d2py5b1: 2py5 B:5-187 [149930]
      Other proteins in same PDB: d2py5a2, d2py5b2
      automated match to d1xhxa1
      protein/DNA complex; complexed with edo
  6. Domain(s) for 2pyj:
    1. 2124502Domain d2pyja1: 2pyj A:5-187 [149943]
      Other proteins in same PDB: d2pyja2, d2pyjb2
      automated match to d1xhxa1
      protein/DNA complex; complexed with dgt, edo, mg, mn
    2. 2124503Domain d2pyjb1: 2pyj B:3-187 [149945]
      Other proteins in same PDB: d2pyja2, d2pyjb2
      automated match to d1xhxa1
      protein/DNA complex; complexed with dgt, edo, mg, mn
  7. Domain(s) for 2pyl:
  8. Domain(s) for 2pzs:
    1. 2124511Domain d2pzsa1: 2pzs A:5-187 [149965]
      Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
      automated match to d1xhxa1
      protein/DNA complex
    2. 2124512Domain d2pzsb1: 2pzs B:5-187 [149967]
      Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
      automated match to d1xhxa1
      protein/DNA complex
    3. 2124513Domain d2pzsc1: 2pzs C:5-187 [149969]
      Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
      automated match to d1xhxa1
      protein/DNA complex
    4. 2124514Domain d2pzsd1: 2pzs D:5-187 [149971]
      Other proteins in same PDB: d2pzsa2, d2pzsb2, d2pzsc2, d2pzsd2
      automated match to d1xhxa1
      protein/DNA complex

More info for Species Bacteriophage phi-29 [TaxId:10756] from c.55.3.5 Exonuclease domain of phi29 DNA polymerase

Timeline for Species Bacteriophage phi-29 [TaxId:10756] from c.55.3.5 Exonuclease domain of phi29 DNA polymerase: