Lineage for Protein: automated matches

  1. Root: SCOPe 2.06
  2. 1976409Class a: All alpha proteins [46456] (289 folds)
  3. 1991985Fold a.28: Acyl carrier protein-like [47335] (3 superfamilies)
    4 helices, bundle; helix 3 is shorter than others; up-and-down
  4. 1992228Superfamily a.28.3: Retrovirus capsid dimerization domain-like [47353] (3 families) (S)
  5. 1992229Family a.28.3.1: Retrovirus capsid protein C-terminal domain [47354] (5 protein domains)
  6. 1992267Protein automated matches [226861] (4 species)
    not a true protein

Species:

  1. 1992268Hiv-1 m:b_hxb2r [TaxId:11706] [255365] (1 PDB entry)
  2. 1992271Human immunodeficiency virus 1 [TaxId:11676] [224990] (6 PDB entries)
    1. Domain for 2buo:
    2. Domain for 2l6e:
    3. Domain for 2xt1:
    4. Domains for 2xv6:
      1. 1992277Domain d2xv6a_: 2xv6 A: [198664]
        Other proteins in same PDB: d2xv6b1, d2xv6b2, d2xv6d1, d2xv6d2
        automated match to d1baja_
      2. 1992278Domain d2xv6c_: 2xv6 C: [198665]
        Other proteins in same PDB: d2xv6b1, d2xv6b2, d2xv6d1, d2xv6d2
        automated match to d1baja_
    5. Domains for 4coc:
      1. 1992273Domain d4coca_: 4coc A: [256638]
        automated match to d2xt1a_
        complexed with so4; mutant
      2. 1992274Domain d4cocb_: 4coc B: [262603]
        automated match to d2xt1a_
        complexed with so4; mutant
      3. 1992275Domain d4cocc_: 4coc C: [262604]
        automated match to d2xt1a_
        complexed with so4; mutant
    6. Domains for 4cop:
      1. 1992279Domain d4copa_: 4cop A: [256639]
        automated match to d2xt1a_
        mutant
      2. 1992280Domain d4copb_: 4cop B: [259185]
        automated match to d2xt1a_
        mutant
  3. 1992282Rous sarcoma virus [TaxId:11888] [225677] (7 PDB entries)
    1. Domain for 3g0v:
    2. Domains for 3g1g:
      1. 1992289Domain d3g1ga_: 3g1g A: [210307]
        automated match to d1eoqa_
      2. 1992290Domain d3g1gb_: 3g1g B: [210308]
        automated match to d1eoqa_
    3. Domains for 3g1i:
      1. 1992287Domain d3g1ia_: 3g1i A: [210309]
        automated match to d1eoqa_
        complexed with so4
      2. 1992288Domain d3g1ib_: 3g1i B: [210310]
        automated match to d1eoqa_
        complexed with so4
    4. Domain for 3g21:
    5. Domain for 3g26:
    6. Domain for 3g28:
    7. Domains for 3g29:
      1. 1992291Domain d3g29a_: 3g29 A: [210324]
        automated match to d1eoqa_
        mutant
      2. 1992292Domain d3g29b_: 3g29 B: [210325]
        automated match to d1eoqa_
        mutant
  4. 2296313Human immunodeficiency virus type 1 group m subtype b (isolate ny5) [TaxId:11698] [339614] (1 PDB entry)

More info for Protein automated matches from a.28.3.1: Retrovirus capsid protein C-terminal domain

Timeline for Protein automated matches from a.28.3.1: Retrovirus capsid protein C-terminal domain: