PDB entry 2xv6

View 2xv6 on RCSB PDB site
Description: Crystal structure of the HIV-1 capsid protein C-terminal domain (146- 220) in complex with a camelid VHH.
Class: viral protein/immune system
Keywords: viral protein-immune system complex
Deposited on 2010-10-22, released 2011-10-12
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-08-14, with a file datestamp of 2019-08-09.
Experiment type: XRAY
Resolution: 1.89 Å
R-factor: N/A
AEROSPACI score: 0.34 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: capsid protein p24
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2xv6a_
  • Chain 'B':
    Compound: camelid vhh 9
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 2XV6
    Domains in SCOPe 2.08: d2xv6b1, d2xv6b2
  • Chain 'C':
    Compound: capsid protein p24
    Species: Human immunodeficiency virus 1 [TaxId:11676]
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d2xv6c_
  • Chain 'D':
    Compound: camelid vhh 9
    Species: VICUGNA PACOS [TaxId:30538]
    Database cross-references and differences (RAF-indexed):
    • PDB 2XV6
    Domains in SCOPe 2.08: d2xv6d1, d2xv6d2
  • Heterogens: HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence; same for both SEQRES and ATOM records: (download) 
    >2xv6A (A:)
sptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkal
gpgatleemmtacqg

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2xv6B (B:)
maqvqlvesggglvqaggslrlscaasgsffmsnvmawyrqapgkareliaairggdmst
vyddsvkgrftitrdddknilylqmndlkpedtamyyckasgsswgqgtqvtvsshhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2xv6B (B:)
aqvqlvesggglvqaggslrlscaasgsffmsnvmawyrqapgkareliaairggdmstv
yddsvkgrftitrdddknilylqmndlkpedtamyyckasgsswgqgtqvtvss

  • Chain 'C':
    Sequence, based on SEQRES records: (download) 
    >2xv6C (C:)
sptsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkal
gpgatleemmtacqg

    Sequence, based on observed residues (ATOM records): (download) 
    >2xv6C (C:)
tsildirqgpkepfrdyvdrfyktlraeqasqevknwmtetllvqnanpdcktilkalat
leemmtac

  • Chain 'D':
    Sequence, based on SEQRES records: (download) 
    >2xv6D (D:)
maqvqlvesggglvqaggslrlscaasgsffmsnvmawyrqapgkareliaairggdmst
vyddsvkgrftitrdddknilylqmndlkpedtamyyckasgsswgqgtqvtvsshhhhh
h

    Sequence, based on observed residues (ATOM records): (download) 
    >2xv6D (D:)
qvqlvesggglvqaggslrlscaasgsffmsnvmawyrqapgkareliaairggdmstvy
ddsvkgrftitrdddknilylqmndlkpedtamyyckasgsswgqgtqvtvss