Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2530962Class d: Alpha and beta proteins (a+b) [53931] (388 folds)
  3. 2606866Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 2606867Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 2606868Family d.167.1.1: Peptide deformylase [56421] (2 proteins)
    automatically mapped to Pfam PF01327
  6. 2606994Protein automated matches [190200] (10 species)
    not a true protein

Species:

  1. 2606995Acinetobacter baumannii [TaxId:1409923] [380325] (6 PDB entries)
    1. Domains for 6jer:
      1. 2607004Domain d6jera_: 6jer A: [380336]
        automated match to d1bs4a_
        complexed with zn
      2. 2607005Domain d6jerb_: 6jer B: [380390]
        automated match to d1bs4a_
        complexed with zn
    2. Domains for 6jet:
      1. 2607006Domain d6jeta_: 6jet A: [380377]
        automated match to d4al2b_
        complexed with bb2, zn
      2. 2607007Domain d6jetb_: 6jet B: [380357]
        automated match to d4al2b_
        complexed with bb2, zn
    3. Domains for 6jeu:
      1. 2607000Domain d6jeua_: 6jeu A: [380326]
        automated match to d1bs4a_
        complexed with k1u, zn
      2. 2607001Domain d6jeub_: 6jeu B: [380344]
        automated match to d1bs4a_
        complexed with k1u, zn
    4. Domains for 6jev:
      1. 2606996Domain d6jeva_: 6jev A: [380346]
        automated match to d1bs4a_
        complexed with k2u, zn
      2. 2606997Domain d6jevb_: 6jev B: [380380]
        automated match to d1bs4a_
        complexed with k2u, zn
    5. Domains for 6jew:
      1. 2606998Domain d6jewa_: 6jew A: [380328]
        automated match to d1bs4a_
        complexed with k3u, zn
      2. 2606999Domain d6jewb_: 6jew B: [380340]
        automated match to d1bs4a_
        complexed with k3u, zn
    6. Domains for 6jex:
      1. 2607002Domain d6jexa_: 6jex A: [380360]
        automated match to d1bs4a_
        complexed with lhy, zn
      2. 2607003Domain d6jexb_: 6jex B: [380391]
        automated match to d1bs4a_
        complexed with lhy, zn
  2. 2607008Bacillus cereus [TaxId:226900] [188316] (1 PDB entry)
  3. 2607011Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry)
  4. 2607014Escherichia coli [TaxId:469008] [194798] (3 PDB entries)
    1. Domains for 4al2:
      1. 2607017Domain d4al2a_: 4al2 A: [219016]
        automated match to d4az4a_
        complexed with h2s, ni
      2. 2607018Domain d4al2b_: 4al2 B: [219017]
        automated match to d4az4a_
        complexed with h2s, ni
      3. 2607019Domain d4al2c_: 4al2 C: [219018]
        automated match to d4az4a_
        complexed with h2s, ni
    2. Domain for 4al3:
    3. Domain for 4az4:
  5. 2607020Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries)
    1. Domains for 4wxk:
      1. 2607021Domain d4wxka_: 4wxk A: [279492]
        automated match to d1bs4a_
        complexed with gol, ni
      2. 2607022Domain d4wxkb_: 4wxk B: [279493]
        automated match to d1bs4a_
        complexed with gol, ni
      3. 2607023Domain d4wxkc_: 4wxk C: [279495]
        automated match to d1bs4a_
        complexed with gol, ni
      4. 2607024Domain d4wxkd_: 4wxk D: [279496]
        automated match to d1bs4a_
        complexed with gol, ni
    2. Domains for 4wxl:
      1. 2607025Domain d4wxla_: 4wxl A: [279494]
        automated match to d1bs4a_
        complexed with bb2, ni
      2. 2607026Domain d4wxlb_: 4wxl B: [279499]
        automated match to d1bs4a_
        complexed with bb2, ni
      3. 2607027Domain d4wxlc_: 4wxl C: [279498]
        automated match to d1bs4a_
        complexed with bb2, ni
      4. 2607028Domain d4wxld_: 4wxl D: [279497]
        automated match to d1bs4a_
        complexed with bb2, ni
  6. 2607029Staphylococcus aureus [TaxId:1280] [186945] (1 PDB entry)
  7. 2607032Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries)
    1. Domain for 3u7k:
    2. Domain for 3u7l:
    3. Domain for 3u7m:
    4. Domain for 3u7n:
  8. 2607037Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)
    1. Domain for 5jex:
    2. Domain for 5jey:
    3. Domain for 5jf1:
    4. Domain for 5jf2:
    5. Domain for 5jf3:
    6. Domain for 5jf4:
    7. Domain for 5jf5:
    8. Domain for 5jf6:
    9. Domain for 5jf7:
    10. Domain for 5jf8:
  9. 2607048Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry)
  10. 2607050Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry)

More info for Protein automated matches from d.167.1.1: Peptide deformylase

Timeline for Protein automated matches from d.167.1.1: Peptide deformylase: