Class d: Alpha and beta proteins (a+b) [53931] (388 folds) |
Fold d.167: Peptide deformylase [56419] (1 superfamily) alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix |
Superfamily d.167.1: Peptide deformylase [56420] (2 families) nickel-dependent enzyme |
Family d.167.1.1: Peptide deformylase [56421] (2 proteins) automatically mapped to Pfam PF01327 |
Protein automated matches [190200] (10 species) not a true protein |
Acinetobacter baumannii [TaxId:1409923] [380325] (6 PDB entries) |
Domain d6jera_: 6jer A: [380336] automated match to d1bs4a_ complexed with zn |
Domain d6jerb_: 6jer B: [380390] automated match to d1bs4a_ complexed with zn |
Domain d6jeta_: 6jet A: [380377] automated match to d4al2b_ complexed with bb2, zn |
Domain d6jetb_: 6jet B: [380357] automated match to d4al2b_ complexed with bb2, zn |
Domain d6jeua_: 6jeu A: [380326] automated match to d1bs4a_ complexed with k1u, zn |
Domain d6jeub_: 6jeu B: [380344] automated match to d1bs4a_ complexed with k1u, zn |
Domain d6jeva_: 6jev A: [380346] automated match to d1bs4a_ complexed with k2u, zn |
Domain d6jevb_: 6jev B: [380380] automated match to d1bs4a_ complexed with k2u, zn |
Domain d6jewa_: 6jew A: [380328] automated match to d1bs4a_ complexed with k3u, zn |
Domain d6jewb_: 6jew B: [380340] automated match to d1bs4a_ complexed with k3u, zn |
Domain d6jexa_: 6jex A: [380360] automated match to d1bs4a_ complexed with lhy, zn |
Domain d6jexb_: 6jex B: [380391] automated match to d1bs4a_ complexed with lhy, zn |
Bacillus cereus [TaxId:226900] [188316] (1 PDB entry) |
Domain d2okla1: 2okl A:1-184 [166741] Other proteins in same PDB: d2okla2 automated match to d1lqya_ complexed with bb2, cit, zn |
Domain d2oklb_: 2okl B: [166742] Other proteins in same PDB: d2okla2 automated match to d1lqya_ complexed with bb2, cit, zn |
Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry) |
Domain d3cmda1: 3cmd A:1-187 [208899] Other proteins in same PDB: d3cmda2, d3cmdb2 automated match to d2oklb_ complexed with fe, mli, na |
Domain d3cmdb1: 3cmd B:1-187 [208900] Other proteins in same PDB: d3cmda2, d3cmdb2 automated match to d2oklb_ complexed with fe, mli, na |
Escherichia coli [TaxId:469008] [194798] (3 PDB entries) |
Domain d4al2a_: 4al2 A: [219016] automated match to d4az4a_ complexed with h2s, ni |
Domain d4al2b_: 4al2 B: [219017] automated match to d4az4a_ complexed with h2s, ni |
Domain d4al2c_: 4al2 C: [219018] automated match to d4az4a_ complexed with h2s, ni |
Domain d4al3a_: 4al3 A: [219019] automated match to d4az4a_ complexed with bme, cl, co |
Domain d4az4a_: 4az4 A: [194799] automated match to d1bs4a_ complexed with co, h2s |
Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries) |
Domain d4wxka_: 4wxk A: [279492] automated match to d1bs4a_ complexed with gol, ni |
Domain d4wxkb_: 4wxk B: [279493] automated match to d1bs4a_ complexed with gol, ni |
Domain d4wxkc_: 4wxk C: [279495] automated match to d1bs4a_ complexed with gol, ni |
Domain d4wxkd_: 4wxk D: [279496] automated match to d1bs4a_ complexed with gol, ni |
Domain d4wxla_: 4wxl A: [279494] automated match to d1bs4a_ complexed with bb2, ni |
Domain d4wxlb_: 4wxl B: [279499] automated match to d1bs4a_ complexed with bb2, ni |
Domain d4wxlc_: 4wxl C: [279498] automated match to d1bs4a_ complexed with bb2, ni |
Domain d4wxld_: 4wxl D: [279497] automated match to d1bs4a_ complexed with bb2, ni |
Staphylococcus aureus [TaxId:1280] [186945] (1 PDB entry) |
Domain d2ai9a_: 2ai9 A: [126822] automated match to d1lqwa_ complexed with ni, so4 |
Domain d2ai9b_: 2ai9 B: [126823] automated match to d1lqwa_ complexed with ni, so4 |
Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries) |
Domain d3u7ka1: 3u7k A:1-183 [192164] Other proteins in same PDB: d3u7ka2 automated match to d1lmha_ complexed with mdb, zn |
Domain d3u7la1: 3u7l A:1-183 [192165] Other proteins in same PDB: d3u7la2 automated match to d1lmha_ complexed with udb, zn |
Domain d3u7ma1: 3u7m A:1-183 [192166] Other proteins in same PDB: d3u7ma2 automated match to d1lmha_ complexed with fhf, zn |
Domain d3u7na1: 3u7n A:1-183 [192167] Other proteins in same PDB: d3u7na2 automated match to d1lmha_ complexed with uhf, zn |
Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries) |
Domain d5jexa_: 5jex A: [326637] automated match to d3l87a_ complexed with imd, zn |
Domain d5jeya_: 5jey A: [326742] automated match to d3l87a_ complexed with ni |
Domain d5jf1a_: 5jf1 A: [326730] automated match to d3l87a_ complexed with act, bb2, zn |
Domain d5jf2a_: 5jf2 A: [326658] automated match to d3l87a_ complexed with act, imd, sf7, zn |
Domain d5jf3a_: 5jf3 A: [326665] automated match to d3l87a_ complexed with act, imd, sf5, zn |
Domain d5jf4a_: 5jf4 A: [326668] automated match to d3l87a_ complexed with 6jt, act, imd, zn |
Domain d5jf5a_: 5jf5 A: [326667] automated match to d3l87a_ complexed with 7jt, act, imd, zn |
Domain d5jf6a_: 5jf6 A: [326669] automated match to d3l87a_ complexed with act, bb4, zn |
Domain d5jf7a_: 5jf7 A: [326737] automated match to d3l87a_ complexed with 6ju, act, imd, zn |
Domain d5jf8a_: 5jf8 A: [326644] automated match to d3l87a_ complexed with act, imd, pn3, zn |
Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry) |
Domain d3l87a_: 3l87 A: [247414] automated match to d2os3a_ complexed with fe |
Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry) |
Domain d3fwxa_: 3fwx A: [176120] automated match to d1bs4a_ complexed with zn |
Domain d3fwxb_: 3fwx B: [176121] automated match to d1bs4a_ complexed with zn |
Timeline for Protein automated matches from d.167.1.1: Peptide deformylase: