SCOPe 2.07: Family d.167.1.1: Peptide deformylase

Lineage for Family d.167.1.1: Peptide deformylase

1. Root: SCOPe 2.07

2. Class d: Alpha and beta proteins (a+b) [53931] (388 folds)

3. Fold d.167: Peptide deformylase [56419] (1 superfamily)
   alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix

4. Superfamily d.167.1: Peptide deformylase [56420] (2 families)
   nickel-dependent enzyme

5. Family d.167.1.1: Peptide deformylase [56421] (2 proteins)
   automatically mapped to Pfam PF01327

Proteins:

1. Peptide deformylase [56422] (11 species)

   1. Species Bacillus stearothermophilus [TaxId:1422] [75580] (1 PDB entry)

   2. Species Enterococcus faecalis [TaxId:1351] [225419] (2 PDB entries)

   3. Species Escherichia coli [TaxId:562] [56423] (21 PDB entries)

   4. Species Leptospira interrogans [TaxId:173] [103340] (5 PDB entries)
      Uniprot Q72S74

   5. Species Malaria parasite (Plasmodium falciparum) [TaxId:5833] [75581] (3 PDB entries)

   6. Species Pneumococcus (Streptococcus pneumoniae) [TaxId:1313] [90057] (10 PDB entries)

   7. Species Pseudomonas aeruginosa [TaxId:287] [75578] (4 PDB entries)

   8. Species Staphylococcus aureus [TaxId:1280] [75579] (8 PDB entries)
      Uniprot Q9F4L4

   9. Species Streptococcus pyogenes [TaxId:160490] [188359] (1 PDB entry)

   10. Species Thermotoga maritima [TaxId:2336] [90058] (1 PDB entry)

   11. Species Thermus thermophilus [TaxId:274] [118165] (1 PDB entry)
       Uniprot P43522

2. automated matches [190200] (10 species)
   not a true protein

   1. Species Acinetobacter baumannii [TaxId:1409923] [380325] (6 PDB entries)

   2. Species Bacillus cereus [TaxId:226900] [188316] (1 PDB entry)

   3. Species Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry)

   4. Species Escherichia coli [TaxId:469008] [194798] (3 PDB entries)

   5. Species Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries)

   6. Species Staphylococcus aureus [TaxId:1280] [186945] (1 PDB entry)

   7. Species Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries)

   8. Species Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)

   9. Species Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry)

   10. Species Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry)

More info for Family d.167.1.1: Peptide deformylase

Timeline for Family d.167.1.1: Peptide deformylase:

• Family d.167.1.1: Peptide deformylase first appeared (with stable ids) in SCOP 1.55
  
• Family d.167.1.1: Peptide deformylase appears in SCOPe 2.06
  
• Family d.167.1.1: Peptide deformylase appears in the current release, SCOPe 2.08