Lineage for Protein: automated matches

  1. Root: SCOPe 2.08
  2. 2923792Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
  3. 3000942Fold d.167: Peptide deformylase [56419] (1 superfamily)
    alpha-beta(5)-alpha; 3 layers: a/b/a; meander beta-sheet wraps around the C-terminal alpha-helix
  4. 3000943Superfamily d.167.1: Peptide deformylase [56420] (2 families) (S)
    nickel-dependent enzyme
  5. 3000944Family d.167.1.1: Peptide deformylase [56421] (2 proteins)
    automatically mapped to Pfam PF01327
  6. 3001072Protein automated matches [190200] (9 species)
    not a true protein

Species:

  1. 3001073Acinetobacter baumannii [TaxId:1409923] [380325] (6 PDB entries)
    1. Domains for 6jer:
      1. 3001082Domain d6jera_: 6jer A: [380336]
        automated match to d1bs4a_
        complexed with zn
      2. 3001083Domain d6jerb_: 6jer B: [380390]
        automated match to d1bs4a_
        complexed with zn
    2. Domains for 6jet:
      1. 3001084Domain d6jeta_: 6jet A: [380377]
        automated match to d4al2b_
        complexed with bb2, zn
      2. 3001085Domain d6jetb_: 6jet B: [380357]
        automated match to d4al2b_
        complexed with bb2, zn
    3. Domains for 6jeu:
      1. 3001078Domain d6jeua_: 6jeu A: [380326]
        automated match to d1bs4a_
        complexed with k1u, zn
      2. 3001079Domain d6jeub_: 6jeu B: [380344]
        automated match to d1bs4a_
        complexed with k1u, zn
    4. Domains for 6jev:
      1. 3001074Domain d6jeva_: 6jev A: [380346]
        automated match to d1bs4a_
        complexed with k2u, zn
      2. 3001075Domain d6jevb_: 6jev B: [380380]
        automated match to d1bs4a_
        complexed with k2u, zn
    5. Domains for 6jew:
      1. 3001076Domain d6jewa_: 6jew A: [380328]
        automated match to d1bs4a_
        complexed with k3u, zn
      2. 3001077Domain d6jewb_: 6jew B: [380340]
        automated match to d1bs4a_
        complexed with k3u, zn
    6. Domains for 6jex:
      1. 3001080Domain d6jexa_: 6jex A: [380360]
        automated match to d1bs4a_
        complexed with lhy, zn
      2. 3001081Domain d6jexb_: 6jex B: [380391]
        automated match to d1bs4a_
        complexed with lhy, zn
  2. 3001086Bacillus cereus [TaxId:226900] [188316] (1 PDB entry)
  3. 3001089Enterococcus faecium [TaxId:1352] [226815] (1 PDB entry)
  4. 3001092Escherichia coli [TaxId:469008] [194798] (3 PDB entries)
    1. Domains for 4al2:
      1. 3001095Domain d4al2a_: 4al2 A: [219016]
        automated match to d4az4a_
        complexed with h2s, ni
      2. 3001096Domain d4al2b_: 4al2 B: [219017]
        automated match to d4az4a_
        complexed with h2s, ni
      3. 3001097Domain d4al2c_: 4al2 C: [219018]
        automated match to d4az4a_
        complexed with h2s, ni
    2. Domain for 4al3:
    3. Domain for 4az4:
  5. 3001098Haemophilus influenzae [TaxId:281310] [279491] (2 PDB entries)
    1. Domains for 4wxk:
      1. 3001099Domain d4wxka_: 4wxk A: [279492]
        automated match to d1bs4a_
        complexed with gol, ni
      2. 3001100Domain d4wxkb_: 4wxk B: [279493]
        automated match to d1bs4a_
        complexed with gol, ni
      3. 3001101Domain d4wxkc_: 4wxk C: [279495]
        automated match to d1bs4a_
        complexed with gol, ni
      4. 3001102Domain d4wxkd_: 4wxk D: [279496]
        automated match to d1bs4a_
        complexed with gol, ni
    2. Domains for 4wxl:
      1. 3001103Domain d4wxla_: 4wxl A: [279494]
        automated match to d1bs4a_
        complexed with bb2, ni
      2. 3001104Domain d4wxlb_: 4wxl B: [279499]
        automated match to d1bs4a_
        complexed with bb2, ni
      3. 3001105Domain d4wxlc_: 4wxl C: [279498]
        automated match to d1bs4a_
        complexed with bb2, ni
      4. 3001106Domain d4wxld_: 4wxl D: [279497]
        automated match to d1bs4a_
        complexed with bb2, ni
  6. 3001107Staphylococcus aureus [TaxId:93062] [192454] (4 PDB entries)
    1. Domain for 3u7k:
    2. Domain for 3u7l:
    3. Domain for 3u7m:
    4. Domain for 3u7n:
  7. 3001112Streptococcus agalactiae [TaxId:1311] [326636] (10 PDB entries)
    1. Domain for 5jex:
    2. Domain for 5jey:
    3. Domain for 5jf1:
    4. Domain for 5jf2:
    5. Domain for 5jf3:
    6. Domain for 5jf4:
    7. Domain for 5jf5:
    8. Domain for 5jf6:
    9. Domain for 5jf7:
    10. Domain for 5jf8:
  8. 3001123Streptococcus mutans [TaxId:210007] [255922] (1 PDB entry)
  9. 3001125Vibrio cholerae [TaxId:345073] [188814] (1 PDB entry)

More info for Protein automated matches from d.167.1.1: Peptide deformylase

Timeline for Protein automated matches from d.167.1.1: Peptide deformylase: