SCOPe 2.04: Protein: Viral RNA polymerase

Lineage for Protein: Viral RNA polymerase

Root: SCOPe 2.04
Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)
Protein Viral RNA polymerase [56695] (17 species)

Species:

Avian infectious bursal disease virus [TaxId:10995] [160955] (1 PDB entry)
Uniprot Q9Q6Q5 31-804
- Domain for 2pgg:
  - Domain d2pgga1: 2pgg A:31-804 [149462]
Bovine viral diarrhea virus [TaxId:11099] [103401] (3 PDB entries)
1. Domain for 1s48:
  - Domain d1s48a_: 1s48 A: [98475]
2. Domain for 1s49:
  - Domain d1s49a_: 1s49 A: [98476]
    protein/RNA complex; complexed with gtp
3. Domains for 1s4f:
  1. Domain d1s4fa_: 1s4f A: [98495]
  2. Domain d1s4fb_: 1s4f B: [98496]
  3. Domain d1s4fc_: 1s4f C: [98497]
  4. Domain d1s4fd_: 1s4f D: [98498]
Foot-and-mouth disease virus - type c [TaxId:12116] [187085] (9 PDB entries)
1. Domain for 2f8e:
  - Domain d2f8ex_: 2f8e X: [133121]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg, mn, u5p
2. Domain for 3klv:
  - Domain d3klva_: 3klv A: [179431]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg; mutant
3. Domain for 3kmq:
  - Domain d3kmqa_: 3kmq A: [179454]
    automated match to d1u09a_
    protein/RNA complex; mutant
4. Domain for 3kms:
  - Domain d3kmsa_: 3kms A: [179455]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg; mutant
5. Domain for 3kna:
  - Domain d3knaa_: 3kna A: [179469]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg; mutant
6. Domain for 3koa:
  - Domain d3koaa_: 3koa A: [179502]
    automated match to d1u09a_
    protein/RNA complex; complexed with dpo, mg; mutant
7. Domain for 3nky:
  - Domain d3nkya_: 3nky A: [182353]
    automated match to d1u09a_
    complexed with mg; mutant
8. Domain for 3nl0:
  - Domain d3nl0a_: 3nl0 A: [193696]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg; mutant
9. Domain for 3nma:
  - Domain d3nmaa_: 3nma A: [182396]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg; mutant
Foot-and-mouth disease virus [TaxId:12110] [111302] (7 PDB entries)
Uniprot Q9QCE4 1858-2327
1. Domain for 1u09:
  - Domain d1u09a_: 1u09 A: [107545]
    protein/DNA complex; protein/RNA complex
2. Domain for 1wne:
  - Domain d1wnea_: 1wne A: [109434]
    protein/DNA complex; protein/RNA complex; complexed with mg
3. Domain for 2d7s:
  - Domain d2d7sa1: 2d7s A:1-474 [131326]
    automatically matched to d1u09a_
    protein/RNA complex
4. Domain for 2e9r:
  - Domain d2e9rx_: 2e9r X: [146732]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg, rtp
5. Domains for 2e9t:
  1. Domain d2e9ta_: 2e9t A: [146733]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg, ppv
  2. Domain d2e9td_: 2e9t D: [146734]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg, ppv
6. Domain for 2e9z:
  - Domain d2e9za_: 2e9z A: [146753]
    automated match to d3nmaa_
    protein/RNA complex; complexed with mg, ppv, utp
7. Domains for 2ec0:
  1. Domain d2ec0a_: 2ec0 A: [146776]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg, ppv
  2. Domain d2ec0d_: 2ec0 D: [146777]
    automated match to d1u09a_
    protein/RNA complex; complexed with mg, ppv
Hepatitis C virus isolate bk [TaxId:11105] [195056] (4 PDB entries)
1. Domains for 2giq:
  1. Domain d2giqa_: 2giq A: [164724]
    automated match to d1nb4a_
    complexed with nn2
  2. Domain d2giqb_: 2giq B: [164725]
    automated match to d1nb4a_
    complexed with nn2
2. Domains for 2gir:
  1. Domain d2gira_: 2gir A: [164726]
    automated match to d1nb4a_
    complexed with nn3
  2. Domain d2girb_: 2gir B: [164727]
    automated match to d1nb4a_
    complexed with nn3
3. Domains for 4eo6:
  1. Domain d4eo6a_: 4eo6 A: [201886]
    automated match to d4eo6b_
    protein/RNA complex; complexed with 0s2
  2. Domain d4eo6b_: 4eo6 B: [195057]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 0s2
4. Domains for 4eo8:
  1. Domain d4eo8a_: 4eo8 A: [220755]
    automated match to d4eo6b_
    protein/RNA complex; complexed with 0s3
  2. Domain d4eo8b_: 4eo8 B: [220756]
    automated match to d4eo6b_
    protein/RNA complex; complexed with 0s3
Hepatitis c virus isolate [TaxId:420174] [188905] (16 PDB entries)
1. Domains for 3gnv:
  1. Domain d3gnva_: 3gnv A: [176783]
    automated match to d1nb4a_
    protein/RNA complex; complexed with gol, xnz
  2. Domain d3gnvb_: 3gnv B: [176784]
    automated match to d1nb4a_
    protein/RNA complex; complexed with gol, xnz
2. Domains for 3gnw:
  1. Domain d3gnwa_: 3gnw A: [176785]
    automated match to d1nb4a_
    protein/RNA complex; complexed with cl, xnc
  2. Domain d3gnwb_: 3gnw B: [176786]
    automated match to d1nb4a_
    protein/RNA complex; complexed with cl, xnc
3. Domains for 3gol:
  1. Domain d3gola_: 3gol A: [176789]
    automated match to d1nb4a_
    complexed with mg, xnd
  2. Domain d3golb_: 3gol B: [176790]
    automated match to d1nb4a_
    complexed with mg, xnd
4. Domains for 3ske:
  1. Domain d3skea_: 3ske A: [196188]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 054, po4
  2. Domain d3skeb_: 3ske B: [196187]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 054, po4
5. Domain for 4iz0:
  - Domain d4iz0a_: 4iz0 A: [196971]
    automated match to d3gnwb_
    complexed with 2bi
6. Domains for 4j02:
  1. Domain d4j02a_: 4j02 A: [223492]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1je, na, so4
  2. Domain d4j02b_: 4j02 B: [223493]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1je, na, so4
7. Domain for 4jju:
  - Domain d4jjub_: 4jju B: [197324]
    automated match to d3gnwb_
    complexed with 1mb, gol, mg
8. Domains for 4jtw:
  1. Domain d4jtwa_: 4jtw A: [253046]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1nu, gol, mg
  2. Domain d4jtwb_: 4jtw B: [253047]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1nu, gol, mg
9. Domain for 4jy0:
  - Domain d4jy0a_: 4jy0 A: [256822]
    automated match to d3gnwb_
    complexed with 1o9
10. Domains for 4kai:
  1. Domain d4kaia_: 4kai A: [197204]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1pv
  2. Domain d4kaib_: 4kai B: [197111]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1pv
11. Domains for 4kb7:
  1. Domain d4kb7a_: 4kb7 A: [224248]
    automated match to d4kbia_
    protein/RNA complex; complexed with 690
  2. Domain d4kb7b_: 4kb7 B: [224249]
    automated match to d4kbia_
    protein/RNA complex; complexed with 690
12. Domains for 4kbi:
  1. Domain d4kbia_: 4kbi A: [197112]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1c0
  2. Domain d4kbib_: 4kbi B: [197205]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1c0
13. Domains for 4ke5:
  1. Domain d4ke5a_: 4ke5 A: [224265]
    automated match to d4kbia_
    protein/RNA complex; complexed with 1pv
  2. Domain d4ke5b_: 4ke5 B: [224266]
    automated match to d4kbia_
    protein/RNA complex; complexed with 1pv
14. Domain for 4mia:
  - Domain d4miab_: 4mia B: [257080]
    automated match to d3gnwb_
    complexed with 28l, zn
15. Domains for 4mz4:
  1. Domain d4mz4a_: 4mz4 A: [229706]
    automated match to d3upha_
    protein/RNA complex; complexed with 2f3, po4
  2. Domain d4mz4b_: 4mz4 B: [229710]
    automated match to d3upha_
    protein/RNA complex; complexed with 2f3, po4
16. Domains for 4oow:
  1. Domain d4oowa_: 4oow A: [261849]
    automated match to d3gnwb_
    complexed with caq
  2. Domain d4oowb_: 4oow B: [261850]
    automated match to d3gnwb_
    complexed with caq
Hepatitis c virus subtype 1a [TaxId:31646] [189928] (4 PDB entries)
1. Domain for 3qgh:
  - Domain d3qgha_: 3qgh A: [184375]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 63f, po4
2. Domain for 3qgi:
  - Domain d3qgia_: 3qgi A: [184376]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 33f, gol
3. Domains for 4khm:
  1. Domain d4khma_: 4khm A: [197116]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1pv, so4
  2. Domain d4khmb_: 4khm B: [197206]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1pv, so4
4. Domains for 4khr:
  1. Domain d4khra_: 4khr A: [197207]
    automated match to d3gnwb_
    protein/RNA complex; complexed with 1pv, so4
  2. Domain d4khrb_: 4khr B: [202851]
    automated match to d4khra_
    protein/RNA complex; complexed with 1pv, so4
Hepatitis C virus [TaxId:11103] [56697] (72 PDB entries)
1. Domains for 1c2p:
  1. Domain d1c2pa_: 1c2p A: [43117]
  2. Domain d1c2pb_: 1c2p B: [43118]
2. Domains for 1csj:
  1. Domain d1csja_: 1csj A: [43120]
  2. Domain d1csjb_: 1csj B: [43121]
3. Domain for 1gx5:
  - Domain d1gx5a_: 1gx5 A: [70682]
    protein/RNA complex; complexed with gtp, mn
4. Domain for 1gx6:
  - Domain d1gx6a_: 1gx6 A: [70683]
    protein/RNA complex; complexed with mn, utp
5. Domains for 1nb4:
  1. Domain d1nb4a_: 1nb4 A: [85509]
  2. Domain d1nb4b_: 1nb4 B: [85510]
6. Domains for 1nb6:
  1. Domain d1nb6a_: 1nb6 A: [85511]
    protein/RNA complex; complexed with mn, utp
  2. Domain d1nb6b_: 1nb6 B: [85512]
    protein/RNA complex; complexed with mn, utp
7. Domains for 1nb7:
  1. Domain d1nb7a_: 1nb7 A: [85513]
    protein/RNA complex; complexed with mn
  2. Domain d1nb7b_: 1nb7 B: [85514]
    protein/RNA complex; complexed with mn
8. Domains for 1nhu:
  1. Domain d1nhua_: 1nhu A: [85723]
    protein/RNA complex; complexed with 153
  2. Domain d1nhub_: 1nhu B: [85724]
    protein/RNA complex; complexed with 153
9. Domains for 1nhv:
  1. Domain d1nhva_: 1nhv A: [85725]
    protein/RNA complex; complexed with 154
  2. Domain d1nhvb_: 1nhv B: [85726]
    protein/RNA complex; complexed with 154
10. Domain for 1os5:
  - Domain d1os5a_: 1os5 A: [93475]
    protein/RNA complex; complexed with nh1
11. Domain for 1quv:
  - Domain d1quva_: 1quv A: [43119]
12. Domain for 2brk:
  - Domain d2brka_: 2brk A: [129001]
    automated match to d1gx5a_
    protein/RNA complex; complexed with cmf, mn
13. Domain for 2brl:
  - Domain d2brla_: 2brl A: [203633]
    automated match to d1gx5a_
    protein/RNA complex; complexed with mn, poo
14. Domains for 2fvc:
  1. Domain d2fvca_: 2fvc A: [164476]
    automated match to d1nb4a_
    complexed with 888
  2. Domain d2fvcb_: 2fvc B: [164477]
    automated match to d1nb4a_
    complexed with 888
15. Domain for 2hai:
  - Domain d2haia_: 2hai A: [165036]
    automated match to d1nb4a_
    protein/RNA complex; complexed with pfi
16. Domains for 2qe2:
  1. Domain d2qe2a_: 2qe2 A: [167555]
    automated match to d1nb4a_
    complexed with 452
  2. Domain d2qe2b_: 2qe2 B: [167556]
    automated match to d1nb4a_
    complexed with 452
17. Domains for 2qe5:
  1. Domain d2qe5a_: 2qe5 A: [167559]
    automated match to d1nb4a_
    complexed with 617
  2. Domain d2qe5b_: 2qe5 B: [167560]
    automated match to d1nb4a_
    complexed with 617
  3. Domain d2qe5c_: 2qe5 C: [167561]
    automated match to d1nb4a_
    complexed with 617
  4. Domain d2qe5d_: 2qe5 D: [167562]
    automated match to d1nb4a_
    complexed with 617
18. Domains for 2who:
  1. Domain d2whoa_: 2who A: [206824]
    automated match to d1gx5a_
    protein/RNA complex; complexed with mn, vgi
  2. Domain d2whob_: 2who B: [206825]
    automated match to d1gx5a_
    protein/RNA complex; complexed with mn, vgi
19. Domain for 2wrm:
  - Domain d2wrma_: 2wrm A: [206983]
    automated match to d1gx5a_
    complexed with qq3
20. Domains for 2zku:
  1. Domain d2zkua_: 2zku A: [171292]
    automated match to d1nb4a_
    complexed with acy, gol
  2. Domain d2zkub_: 2zku B: [171293]
    automated match to d1nb4a_
    complexed with acy, gol
  3. Domain d2zkuc_: 2zku C: [171294]
    automated match to d1nb4a_
    complexed with acy, gol
  4. Domain d2zkud_: 2zku D: [171295]
    automated match to d1nb4a_
    complexed with acy, gol
21. Domains for 3ciz:
  1. Domain d3ciza_: 3ciz A: [173264]
    automated match to d1nb4a_
    protein/RNA complex; complexed with sx1, zn
  2. Domain d3cizb_: 3ciz B: [173265]
    automated match to d1nb4a_
    protein/RNA complex; complexed with sx1, zn
22. Domains for 3cj0:
  1. Domain d3cj0a_: 3cj0 A: [173266]
    automated match to d1nb4a_
    protein/RNA complex; complexed with sx2
  2. Domain d3cj0b_: 3cj0 B: [173267]
    automated match to d1nb4a_
    protein/RNA complex; complexed with sx2
23. Domains for 3cj2:
  1. Domain d3cj2a_: 3cj2 A: [173268]
    automated match to d1nb4a_
    protein/RNA complex; complexed with ni, sx3
  2. Domain d3cj2b_: 3cj2 B: [173269]
    automated match to d1nb4a_
    protein/RNA complex; complexed with ni, sx3
24. Domains for 3cj3:
  1. Domain d3cj3a_: 3cj3 A: [173270]
    automated match to d1nb4a_
    protein/RNA complex; complexed with ni, sx4
  2. Domain d3cj3b_: 3cj3 B: [173271]
    automated match to d1nb4a_
    protein/RNA complex; complexed with ni, sx4
25. Domains for 3cj4:
  1. Domain d3cj4a_: 3cj4 A: [173272]
    automated match to d1nb4a_
    protein/RNA complex; complexed with ni, sx5
  2. Domain d3cj4b_: 3cj4 B: [173273]
    automated match to d1nb4a_
    protein/RNA complex; complexed with ni, sx5
26. Domains for 3cj5:
  1. Domain d3cj5a_: 3cj5 A: [173274]
    automated match to d1nb4a_
    protein/RNA complex; complexed with sx6
  2. Domain d3cj5b_: 3cj5 B: [173275]
    automated match to d1nb4a_
    protein/RNA complex; complexed with sx6
27. Domain for 3frz:
  - Domain d3frza_: 3frz A: [176007]
    automated match to d1nb4a_
    protein/RNA complex; complexed with ag0, ag6, bme
28. Domains for 3h59:
  1. Domain d3h59a_: 3h59 A: [177195]
    automated match to d1nb4a_
    complexed with h59
  2. Domain d3h59b_: 3h59 B: [177196]
    automated match to d1nb4a_
    complexed with h59
29. Domains for 3h5s:
  1. Domain d3h5sa_: 3h5s A: [177201]
    automated match to d1nb4a_
    complexed with h5s
  2. Domain d3h5sb_: 3h5s B: [177202]
    automated match to d1nb4a_
    complexed with h5s
30. Domains for 3h5u:
  1. Domain d3h5ua_: 3h5u A: [177203]
    automated match to d1nb4a_
    complexed with h5u
  2. Domain d3h5ub_: 3h5u B: [177204]
    automated match to d1nb4a_
    complexed with h5u
31. Domains for 3hky:
  1. Domain d3hkya_: 3hky A: [177660]
    automated match to d1nb4a_
    complexed with cl, ix6, so4
  2. Domain d3hkyb_: 3hky B: [177661]
    automated match to d1nb4a_
    complexed with cl, ix6, so4
32. Domains for 3lkh:
  1. Domain d3lkha_: 3lkh A: [180342]
    automated match to d1nb4a_
    complexed with lt6
  2. Domain d3lkhb_: 3lkh B: [180343]
    automated match to d1nb4a_
    complexed with lt6
33. Domains for 3mf5:
  1. Domain d3mf5a_: 3mf5 A: [181043]
    automated match to d1c2pb_
    complexed with gol, hjz
  2. Domain d3mf5b_: 3mf5 B: [181044]
    automated match to d1c2pb_
    complexed with gol, hjz
34. Domains for 3mwv:
  1. Domain d3mwva_: 3mwv A: [181653]
    automated match to d1nb4a_
  2. Domain d3mwvb_: 3mwv B: [181654]
    automated match to d1nb4a_
35. Domains for 3mww:
  1. Domain d3mwwa_: 3mww A: [181655]
    automated match to d1nb4a_
    complexed with biw, so4
  2. Domain d3mwwb_: 3mww B: [181656]
    automated match to d1nb4a_
    complexed with biw, so4
36. Domains for 3q0z:
  1. Domain d3q0za_: 3q0z A: [184133]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 23e, so4
  2. Domain d3q0zb_: 3q0z B: [184134]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 23e, so4
37. Domains for 3qgd:
  1. Domain d3qgda_: 3qgd A: [184371]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 23e, 26s, so4
  2. Domain d3qgdb_: 3qgd B: [184372]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 23e, 26s, so4
38. Domains for 3qge:
  1. Domain d3qgea_: 3qge A: [248881]
    automated match to d3q0za_
    protein/RNA complex; complexed with 23e, 26f, so4
  2. Domain d3qgeb_: 3qge B: [248882]
    automated match to d3q0za_
    protein/RNA complex; complexed with 23e, 26f, so4
39. Domains for 3qgf:
  1. Domain d3qgfa_: 3qgf A: [184373]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 23e, 46f, so4
  2. Domain d3qgfb_: 3qgf B: [184374]
    automated match to d1nb4a_
    protein/RNA complex; complexed with 23e, 46f, so4
40. Domain for 3ska:
  - Domain d3skab_: 3ska B: [216430]
    Other proteins in same PDB: d3skaa_
    automated match to d3lkha_
    protein/RNA complex; complexed with 053, po4
41. Domains for 3skh:
  1. Domain d3skha_: 3skh A: [216431]
    automated match to d3lkha_
    protein/RNA complex; complexed with 058
  2. Domain d3skhb_: 3skh B: [216432]
    automated match to d3lkha_
    protein/RNA complex; complexed with 058
42. Domains for 3tyq:
  1. Domain d3tyqa_: 3tyq A: [186013]
    automated match to d1nb4a_
    protein/RNA complex; complexed with hi4, po4
  2. Domain d3tyqb_: 3tyq B: [186014]
    automated match to d1nb4a_
    protein/RNA complex; complexed with hi4, po4
43. Domains for 3tyv:
  1. Domain d3tyva_: 3tyv A: [186015]
    automated match to d1nb4a_
    protein/RNA complex; complexed with hi3, po4
  2. Domain d3tyvb_: 3tyv B: [186016]
    automated match to d1nb4a_
    protein/RNA complex; complexed with hi3, po4
44. Domains for 3u4o:
  1. Domain d3u4oa_: 3u4o A: [186076]
    automated match to d1nb4a_
    complexed with 08e, po4
  2. Domain d3u4ob_: 3u4o B: [186077]
    automated match to d1nb4a_
    complexed with 08e, po4
45. Domains for 3u4r:
  1. Domain d3u4ra_: 3u4r A: [186078]
    automated match to d1nb4a_
    complexed with 08f
  2. Domain d3u4rb_: 3u4r B: [186079]
    automated match to d1nb4a_
    complexed with 08f
46. Domains for 4dru:
  1. Domain d4drua_: 4dru A: [195587]
    automated match to d1nb4a_
    complexed with 0ln, gol, so4
  2. Domain d4drub_: 4dru B: [195588]
    automated match to d1nb4a_
    complexed with 0ln, gol, so4
47. Domains for 4eaw:
  1. Domain d4eawa_: 4eaw A: [196703]
    automated match to d1nb4a_
    complexed with 0nq, edo, peg, so4
  2. Domain d4eawb_: 4eaw B: [201821]
    automated match to d4eawa_
    complexed with 0nq, edo, peg, so4
48. Domains for 4gmc:
  1. Domain d4gmca_: 4gmc A: [221997]
    automated match to d3mwva_
    complexed with 1bi, so4
  2. Domain d4gmcb_: 4gmc B: [221998]
    automated match to d3mwva_
    complexed with 1bi, so4
49. Domains for 4ih5:
  1. Domain d4ih5a_: 4ih5 A: [223170]
    automated match to d3mf5a_
    complexed with 12r
  2. Domain d4ih5b_: 4ih5 B: [223171]
    automated match to d3mf5a_
    complexed with 12r
50. Domains for 4ih6:
  1. Domain d4ih6a_: 4ih6 A: [223172]
    automated match to d3mf5a_
    complexed with 1ep
  2. Domain d4ih6b_: 4ih6 B: [223173]
    automated match to d3mf5a_
    complexed with 1ep
51. Domains for 4ih7:
  1. Domain d4ih7a_: 4ih7 A: [223174]
    automated match to d3mf5a_
    complexed with 1er, zn
  2. Domain d4ih7b_: 4ih7 B: [223175]
    automated match to d3mf5a_
    complexed with 1er, zn
52. Domain for 4iz0:
  - Domain d4iz0b_: 4iz0 B: [202683]
    automated match to d3mwva_
    complexed with 2bi
53. Domains for 4j04:
  1. Domain d4j04a_: 4j04 A: [223496]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jf, mn
  2. Domain d4j04b_: 4j04 B: [223497]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jf, mn
54. Domains for 4j06:
  1. Domain d4j06a_: 4j06 A: [223498]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jg
  2. Domain d4j06b_: 4j06 B: [223499]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jg
55. Domains for 4j08:
  1. Domain d4j08a_: 4j08 A: [223500]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jh
  2. Domain d4j08b_: 4j08 B: [223501]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jh
56. Domains for 4j0a:
  1. Domain d4j0aa_: 4j0a A: [223502]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jl
  2. Domain d4j0ab_: 4j0a B: [223503]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1jl
57. Domains for 4jjs:
  1. Domain d4jjsa_: 4jjs A: [223845]
    automated match to d3mwva_
    complexed with 1m9, mg
  2. Domain d4jjsb_: 4jjs B: [223846]
    automated match to d3mwva_
    complexed with 1m9, mg
58. Domain for 4jju:
  - Domain d4jjua_: 4jju A: [202748]
    automated match to d3mwva_
    complexed with 1mb, gol, mg
59. Domains for 4jty:
  1. Domain d4jtya_: 4jty A: [224025]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1nv, gol, mg
  2. Domain d4jtyb_: 4jty B: [224026]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1nv, gol, mg
60. Domains for 4jtz:
  1. Domain d4jtza_: 4jtz A: [224027]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1nw, gol, mg
  2. Domain d4jtzb_: 4jtz B: [224028]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1nw, gol, mg
61. Domains for 4ju1:
  1. Domain d4ju1a_: 4ju1 A: [224029]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1nz, gol, mg
  2. Domain d4ju1b_: 4ju1 B: [224030]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1nz, gol, mg
62. Domains for 4ju2:
  1. Domain d4ju2a_: 4ju2 A: [224031]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o0, gol, mg
  2. Domain d4ju2b_: 4ju2 B: [224032]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o0, gol, mg
63. Domains for 4ju3:
  1. Domain d4ju3a_: 4ju3 A: [229256]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o1, mg
  2. Domain d4ju3b_: 4ju3 B: [229260]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o1, mg
64. Domains for 4ju4:
  1. Domain d4ju4a_: 4ju4 A: [229261]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o3, mg
  2. Domain d4ju4b_: 4ju4 B: [229262]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o3, mg
65. Domains for 4ju6:
  1. Domain d4ju6a_: 4ju6 A: [229258]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o6, mg
  2. Domain d4ju6b_: 4ju6 B: [229257]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o6, mg
66. Domains for 4ju7:
  1. Domain d4ju7a_: 4ju7 A: [229255]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o6, mg
  2. Domain d4ju7b_: 4ju7 B: [229259]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1o6, mg
67. Domains for 4jvq:
  1. Domain d4jvqa_: 4jvq A: [236552]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1ml, gol, mg
  2. Domain d4jvqb_: 4jvq B: [236553]
    automated match to d3mwva_
    protein/RNA complex; complexed with 1ml, gol, mg
68. Domains for 4mk7:
  1. Domain d4mk7a_: 4mk7 A: [228253]
    automated match to d3mf5a_
    complexed with 28o, dms, mg
  2. Domain d4mk7b_: 4mk7 B: [228252]
    automated match to d3mf5a_
    complexed with 28o, dms, mg
69. Domains for 4mk8:
  1. Domain d4mk8a_: 4mk8 A: [228259]
    automated match to d3mf5a_
    complexed with 28q, dms, gol
  2. Domain d4mk8b_: 4mk8 B: [228261]
    automated match to d3mf5a_
    complexed with 28q, dms, gol
70. Domains for 4mk9:
  1. Domain d4mk9a_: 4mk9 A: [228258]
    automated match to d3mf5a_
    complexed with 28r, gol
  2. Domain d4mk9b_: 4mk9 B: [228260]
    automated match to d3mf5a_
    complexed with 28r, gol
71. Domains for 4mka:
  1. Domain d4mkaa_: 4mka A: [228256]
    automated match to d3mf5a_
    complexed with 2ay, dms, gol
  2. Domain d4mkab_: 4mka B: [228257]
    automated match to d3mf5a_
    complexed with 2ay, dms, gol
72. Domains for 4mkb:
  1. Domain d4mkba_: 4mkb A: [228254]
    automated match to d3mf5a_
    complexed with 28v
  2. Domain d4mkbb_: 4mkb B: [228255]
    automated match to d3mf5a_
    complexed with 28v
Hepatitis C virus [TaxId:356411] [193797] (2 PDB entries)
1. Domain for 4e76:
  - Domain d4e76a_: 4e76 A: [220341]
    automated match to d4e78a_
    complexed with edo, so4
2. Domain for 4e78:
  - Domain d4e78a_: 4e78 A: [193798]
    automated match to d3gnwb_
    protein/RNA complex
Human poliovirus 1 [TaxId:12081] [256393] (7 PDB entries)
1. Domain for 2ijf:
  - Domain d2ijfa_: 2ijf A: [242161]
    automated match to d4k4za_
    mutant
2. Domain for 2ily:
  - Domain d2ilya_: 2ily A: [137500]
    automated match to d1ra6a_
    complexed with acy, atp, na
3. Domain for 2ilz:
  - Domain d2ilza_: 2ilz A: [137501]
    automated match to d1ra6a_
    complexed with acy, gtp, mn, na
4. Domain for 2im0:
  - Domain d2im0a_: 2im0 A: [137502]
    automated match to d1ra6a_
    complexed with acy, ctp, na
5. Domain for 2im1:
  - Domain d2im1a_: 2im1 A: [137503]
    automated match to d1ra6a_
    complexed with acy, ctp, mn, na
6. Domain for 2im2:
  - Domain d2im2a_: 2im2 A: [137504]
    automated match to d1ra6a_
    complexed with acy, na, utp
7. Domain for 2im3:
  - Domain d2im3a_: 2im3 A: [137505]
    automated match to d1ra6a_
    complexed with acy, mn, na, utp
Human rhinovirus 14, HRV-14 [TaxId:12131] [111301] (1 PDB entry)
Uniprot P03303 1720-2179
- Domain for 1xr5:
  - Domain d1xr5a_: 1xr5 A: [115864]
    complexed with sm
Human rhinovirus 16 [TaxId:31708] [188024] (2 PDB entries)
1. Domains for 1tp7:
  1. Domain d1tp7a_: 1tp7 A: [161779]
    automated match to d1xr6a_
    complexed with dmx, so4
  2. Domain d1tp7b_: 1tp7 B: [161780]
    automated match to d1xr6a_
    complexed with dmx, so4
  3. Domain d1tp7c_: 1tp7 C: [161781]
    automated match to d1xr6a_
    complexed with dmx, so4
  4. Domain d1tp7d_: 1tp7 D: [161782]
    automated match to d1xr6a_
    complexed with dmx, so4
2. Domains for 4k50:
  1. Domain d4k50a_: 4k50 A: [202832]
    Other proteins in same PDB: d4k50i_
    automated match to d1tp7a_
    protein/RNA complex; complexed with act, gol, so4
  2. Domain d4k50e_: 4k50 E: [202833]
    Other proteins in same PDB: d4k50i_
    automated match to d1tp7a_
    protein/RNA complex; complexed with act, gol, so4
  3. Domain d4k50m_: 4k50 M: [202834]
    Other proteins in same PDB: d4k50i_
    automated match to d1tp7a_
    protein/RNA complex; complexed with act, gol, so4
Human rhinovirus 16, HRV-16 [TaxId:31708] [111300] (1 PDB entry)
Uniprot Q82122 1694-2153
- Domains for 1xr7:
  1. Domain d1xr7a_: 1xr7 A: [115866]
  2. Domain d1xr7b_: 1xr7 B: [115867]
Human rhinovirus 1B, HRV-1B [TaxId:12129] [111299] (1 PDB entry)
Uniprot P12916 1698-2157
- Domain for 1xr6:
  - Domain d1xr6a_: 1xr6 A: [115865]
    complexed with k
Norwalk virus [TaxId:11983] [103400] (7 PDB entries)
1. Domains for 1sh0:
  1. Domain d1sh0a_: 1sh0 A: [98876]
  2. Domain d1sh0b_: 1sh0 B: [98877]
2. Domain for 1sh2:
  - Domain d1sh2a_: 1sh2 A: [98878]
3. Domains for 1sh3:
  1. Domain d1sh3a_: 1sh3 A: [98879]
    complexed with mg
  2. Domain d1sh3b_: 1sh3 B: [98880]
    complexed with mg
4. Domain for 3bsn:
  - Domain d3bsna_: 3bsn A: [172811]
    automated match to d1sh0b_
    protein/RNA complex; complexed with gol, mn, n5c
5. Domain for 3bso:
  - Domain d3bsoa_: 3bso A: [172812]
    automated match to d1sh0b_
    protein/RNA complex; complexed with ctp, gol, mn
6. Domain for 3h5x:
  - Domain d3h5xa_: 3h5x A: [177205]
    automated match to d1sh0b_
    protein/RNA complex; complexed with csg, gol, mn
7. Domain for 3h5y:
  - Domain d3h5ya_: 3h5y A: [177206]
    automated match to d1sh0b_
    protein/RNA complex; complexed with ctp, gol, mn
Poliovirus type 1, strain Mahoney [TaxId:12080] [56696] (12 PDB entries)
Uniprot P03300 1748-2208
1. Domain for 1ra6:
  - Domain d1ra6a_: 1ra6 A: [104879]
    complexed with acy
2. Domain for 1ra7:
  - Domain d1ra7a_: 1ra7 A: [104880]
    complexed with acy, gtp
3. Domain for 1raj:
  - Domain d1raja_: 1raj A: [104881]
4. Domain for 1rdr:
  - Domain d1rdra_: 1rdr A: [43116]
    complexed with ca
5. Domain for 1tql:
  - Domain d1tqla_: 1tql A: [107235]
    complexed with acy; mutant
6. Domains for 2ijd:
  1. Domain d2ijd12: 2ijd 1:184-644 [137475]
    Other proteins in same PDB: d2ijd11, d2ijd21
    automatically matched to d1ra6a_
    complexed with so4, zn
  2. Domain d2ijd22: 2ijd 2:184-644 [137477]
    Other proteins in same PDB: d2ijd11, d2ijd21
    automatically matched to d1ra6a_
    complexed with so4, zn
7. Domains for 3ol6:
  1. Domain d3ol6a_: 3ol6 A: [183110]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, zn
  2. Domain d3ol6e_: 3ol6 E: [183111]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, zn
  3. Domain d3ol6i_: 3ol6 I: [183112]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, zn
  4. Domain d3ol6m_: 3ol6 M: [183113]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, zn
8. Domains for 3ol7:
  1. Domain d3ol7a_: 3ol7 A: [183114]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
  2. Domain d3ol7e_: 3ol7 E: [183115]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
  3. Domain d3ol7i_: 3ol7 I: [183116]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
  4. Domain d3ol7m_: 3ol7 M: [183117]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mg, peg, pop, zn
9. Domains for 3ol8:
  1. Domain d3ol8a_: 3ol8 A: [183118]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mn, pop, zn
  2. Domain d3ol8e_: 3ol8 E: [183119]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mn, pop, zn
  3. Domain d3ol8i_: 3ol8 I: [183120]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mn, pop, zn
  4. Domain d3ol8m_: 3ol8 M: [183121]
    automated match to d1ra6a_
    protein/RNA complex; complexed with gol, ipa, mn, pop, zn
10. Domains for 3ol9:
  1. Domain d3ol9a_: 3ol9 A: [183122]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, pop, zn
  2. Domain d3ol9e_: 3ol9 E: [183123]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, pop, zn
  3. Domain d3ol9i_: 3ol9 I: [183124]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, pop, zn
  4. Domain d3ol9m_: 3ol9 M: [183125]
    automated match to d1ra6a_
    protein/RNA complex; complexed with ipa, pop, zn
11. Domains for 3ola:
  1. Domain d3olaa_: 3ola A: [183126]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
  2. Domain d3olae_: 3ola E: [183127]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
  3. Domain d3olai_: 3ola I: [183128]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
  4. Domain d3olam_: 3ola M: [183129]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dcp, gol, ipa, peg, zn
12. Domains for 3olb:
  1. Domain d3olba_: 3olb A: [183130]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dct, ipa, zn
  2. Domain d3olbe_: 3olb E: [183131]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dct, ipa, zn
  3. Domain d3olbi_: 3olb I: [183132]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dct, ipa, zn
  4. Domain d3olbm_: 3olb M: [183133]
    automated match to d1ra6a_
    protein/RNA complex; complexed with dct, ipa, zn
Rabbit hemorrhagic disease virus [TaxId:11976] [69882] (2 PDB entries)
1. Domains for 1khv:
  1. Domain d1khva_: 1khv A: [68627]
    protein/RNA complex; complexed with lu
  2. Domain d1khvb_: 1khv B: [68628]
    protein/RNA complex; complexed with lu
2. Domains for 1khw:
  1. Domain d1khwa_: 1khw A: [68629]
    protein/RNA complex; complexed with mn
  2. Domain d1khwb_: 1khw B: [68630]
    protein/RNA complex; complexed with mn

More info for Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase

Timeline for Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase:

Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase first appeared (with stable ids) in SCOP 1.55, called Protein RNA-dependent RNA-polymerase from e.8.1.4: RNA-dependent RNA-polymerase
Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase appears in SCOPe 2.03
Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase appears in SCOPe 2.05
Protein Viral RNA polymerase from e.8.1.4: RNA-dependent RNA-polymerase appears in the current release, SCOPe 2.08