PDB entry 3ol7

View 3ol7 on RCSB PDB site
Description: Poliovirus polymerase elongation complex with CTP
Class: transferase/RNA
Keywords: RNA-dependent RNA polymerase, elongation complex, virus, protein-RNA complex, TRANSFERASE-RNA complex
Deposited on 2010-08-25, released 2010-12-22
The last revision prior to the SCOPe 2.04 freeze date was dated 2012-09-05, with a file datestamp of 2012-08-31.
Experiment type: XRAY
Resolution: 2.7 Å
R-factor: 0.229
AEROSPACI score: 0.26 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.04: d3ol7a_
  • Chain 'B':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*up*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'C':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*ap*c)-3')
    Species: synthetic, synthetic
  • Chain 'D':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'E':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.04: d3ol7e_
  • Chain 'F':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*up*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'G':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*ap*c)-3')
    Species: synthetic, synthetic
  • Chain 'H':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'I':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.04: d3ol7i_
  • Chain 'J':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*up*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'K':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*ap*c)-3')
    Species: synthetic, synthetic
  • Chain 'L':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Chain 'M':
    Compound: Polymerase
    Species: Human poliovirus 1 [TaxId:12080]
    Gene: 3D
    Database cross-references and differences (RAF-indexed):
    • Uniprot B3VQP5 (0-460)
      • engineered mutation (445)
    Domains in SCOPe 2.04: d3ol7m_
  • Chain 'N':
    Compound: RNA (5'-r(*ap*ap*gp*up*cp*up*cp*cp*ap*gp*gp*up*cp*up*cp*up*cp*gp*up*cp*cp*gp*gp*ap*ap*a)-3')
    Species: synthetic, synthetic
  • Chain 'O':
    Compound: RNA (5'-r(*gp*cp*cp*cp*gp*gp*ap*cp*gp*ap*gp*ap*gp*ap*c)-3')
    Species: synthetic, synthetic
  • Chain 'P':
    Compound: RNA (5'-r(*gp*gp*gp*ap*gp*ap*up*gp*a)-3')
    Species: synthetic, synthetic
  • Heterogens: MG, POP, IPA, PEG, ZN, GOL, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >3ol7A (A:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ol7A (A:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    Sequence, based on SEQRES records: (download) 
    >3ol7E (E:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ol7E (E:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'F':
    No sequence available.

  • Chain 'G':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'I':
    Sequence, based on SEQRES records: (download) 
    >3ol7I (I:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ol7I (I:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'J':
    No sequence available.

  • Chain 'K':
    No sequence available.

  • Chain 'L':
    No sequence available.

  • Chain 'M':
    Sequence, based on SEQRES records: (download) 
    >3ol7M (M:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsfgssshhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >3ol7M (M:)
geiqwmrpskevgypiinapsktklepsafhyvfegvkepavltkndprlktdfeeaifs
kyvgnkitevdeymkeavdhyagqlmsldinteqmcledamygtdglealdlstsagypy
vamgkkkrdilnkqtrdtkemqklldtyginlplvtyvkdelrsktkveqgksrlieass
lndsvamrmafgnlyaafhknpgvitgsavgcdpdlfwskipvlmeeklfafdytgydas
lspawfealkmvlekigfgdrvdyidylnhshhlyknktycvkggmpsgcsgtsifnsmi
nnliirtlllktykgidldhlkmiaygddviasyphevdasllaqsgkdygltmtpadks
atfetvtwenvtflkrffradekypflihpvmpmkeihesirwtkdprntqdhvrslcll
awhngeeeynkflakirsvpigraldlpeystlyrrwldsf

  • Chain 'N':
    No sequence available.

  • Chain 'O':
    No sequence available.

  • Chain 'P':
    No sequence available.