SCOPe 2.04: Domain d1khva_: 1khv A:

Lineage for d1khva_ (1khv A:)

1. Root: SCOPe 2.04

2. Class e: Multi-domain proteins (alpha and beta) [56572] (68 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.4: RNA-dependent RNA-polymerase [56694] (3 proteins)

6. Protein Viral RNA polymerase [56695] (17 species)

7. Species Rabbit hemorrhagic disease virus [TaxId:11976] [69882] (2 PDB entries)

8. Domain d1khva_: 1khv A: [68627]
   protein/RNA complex; complexed with lu

Details for d1khva_

PDB Entry: 1khv, 2.5 Å

PDB Description: crystal structure of rabbit hemorrhagic disease virus rna-dependent rna polymerase complexed with lu3+

PDB Compounds: (A:) RNA-directed RNA polymerase

SCOPe Domain Sequences for d1khva_:

Sequence, based on SEQRES records:

>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
fcgepidyrgitahrlvgaeprppvsgtryakvpgvpdeyktgyrpanlgrsdpdsdksl
mniavknlqvyqqepkldkvdefieraaadvlgylrfltkgerqanlnfkaafntldlst
scgpfvpgkkidhvkdgvmdqvlakhlykcwsvansgkalhhiyacglkdelrpldkvke
gkkrllwgcdvgvavcaaavfhnicyklkmvarfgpiavgvdmtsrdvdviinnltskas
dflcldyskwdstmspcvvrlaidiladcceqteltksvvltlkshpmtildamivqtkr
glpsgmpftsvinsichwllwsaavykscaeiglhcsnlyedapfytygddgvyamtpmm
vsllpaiienlrdyglsptaadktefidvcplnkisflkrtfeltdigwvskldkssilr
qlewskttsrhmvieetydlakeergvqleelqvaaaahgqeffnfvcrelerqqaytqf
svysydaarkiladrkr

Sequence, based on observed residues (ATOM records):

>d1khva_ e.8.1.4 (A:) Viral RNA polymerase {Rabbit hemorrhagic disease virus [TaxId: 11976]}
fcgepidyrgitahrlvgaeprppvsgtryakvpgvpdeyktgyrpanlgrsdpdsdksl
mniavknlqvyqqepkldkvdefieraaadvlgylrfltkgerqanlnfkaafntldlst
scgpfvpgkkidhvkdgvmdqvlakhlykcwsvansgkalhhiyacglkdelrpldgkkr
llwgcdvgvavcaaavfhnicyklkmvarfgpiavgvdmtsrdvdviinnltskasdflc
ldyskwdstmspcvvrlaidiladcceqteltksvvltlkshpmtildamivqtkrglps
gmpftsvinsichwllwsaavykscaeiglhcsnlyedapfytygddgvyamtpmmvsll
paiienlrdyglsptaadktefidvcplnkisflkrtfeltdigwvskldkssilrqlew
skttsrhmvieetydlakeergvqleelqvaaaahgqeffnfvcrelerqqaytqfsvys
ydaarkiladrkr

Timeline for d1khva_:

• d1khva_ first appeared in SCOP 1.59
  
• d1khva_ appears in SCOPe 2.03
  
• d1khva_ appears in SCOPe 2.05
  
• d1khva_ appears in the current release, SCOPe 2.08