SCOPe 2.08: Species: Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

Lineage for Species: Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (5 proteins)
contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)
in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain

Protein DinB homolog (DBH) [100889] (3 species)
Species Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100890] (41 PDB entries)

PDB entries in Species: Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]:

Domain(s) for 1jx4:
- Domain d1jx4a2: 1jx4 A:1-240 [90379]
  Other proteins in same PDB: d1jx4a1
  protein/DNA complex; complexed with adi, ca, mg
Domain(s) for 1jxl:
- Domain d1jxla2: 1jxl A:1-240 [90381]
  Other proteins in same PDB: d1jxla1
  protein/DNA complex; complexed with ca, dg3, edo, mg
Domain(s) for 1n48:
- Domain d1n48a2: 1n48 A:1-240 [91616]
  Other proteins in same PDB: d1n48a1
  protein/DNA complex; complexed with atp, ca
Domain(s) for 1n56:
1. Domain d1n56a2: 1n56 A:1-240 [91681]
  Other proteins in same PDB: d1n56a1, d1n56b1
  protein/DNA complex; complexed with atp, ca, mg
2. Domain d1n56b2: 1n56 B:1-240 [91683]
  Other proteins in same PDB: d1n56a1, d1n56b1
  protein/DNA complex; complexed with atp, ca, mg
Domain(s) for 1pm0:
- Domain d1pm0a1: 1pm0 A:1-240 [302894]
  Other proteins in same PDB: d1pm0a2
  automated match to d1jx4a2
  complexed with atp, ca
Domain(s) for 1ryr:
- Domain d1ryra2: 1ryr A:1-240 [98110]
  Other proteins in same PDB: d1ryra1
  protein/DNA complex; complexed with atp, ca
Domain(s) for 1rys:
1. Domain d1rysa2: 1rys A:1-240 [98112]
  Other proteins in same PDB: d1rysa1, d1rysb1
  protein/DNA complex; complexed with atp, ca, edo, na
2. Domain d1rysb2: 1rys B:1-240 [98114]
  Other proteins in same PDB: d1rysa1, d1rysb1
  protein/DNA complex; complexed with atp, ca, edo, na
Domain(s) for 1s0m:
1. Domain d1s0ma2: 1s0m A:1-240 [98291]
  Other proteins in same PDB: d1s0ma1, d1s0mb1
  protein/DNA complex; complexed with bap, ca, dtp, mg
2. Domain d1s0mb2: 1s0m B:1-240 [98293]
  Other proteins in same PDB: d1s0ma1, d1s0mb1
  protein/DNA complex; complexed with bap, ca, dtp, mg
Domain(s) for 1s0n:
- Domain d1s0na2: 1s0n A:1-240 [98295]
  Other proteins in same PDB: d1s0na1
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 1s0o:
1. Domain d1s0oa2: 1s0o A:1-240 [98297]
  Other proteins in same PDB: d1s0oa1, d1s0ob1
  protein/DNA complex; complexed with ca, mg, ttp
2. Domain d1s0ob2: 1s0o B:1-240 [98299]
  Other proteins in same PDB: d1s0oa1, d1s0ob1
  protein/DNA complex; complexed with ca, mg, ttp
Domain(s) for 1s10:
- Domain d1s10a2: 1s10 A:1-240 [98328]
  Other proteins in same PDB: d1s10a1
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 1s97:
1. Domain d1s97a2: 1s97 A:1-240 [98743]
  Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
  protein/DNA complex; complexed with ca, dct
2. Domain d1s97b2: 1s97 B:1-240 [98745]
  Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
  protein/DNA complex; complexed with ca, dct
3. Domain d1s97c2: 1s97 C:1-240 [98747]
  Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
  protein/DNA complex; complexed with ca, dct
4. Domain d1s97d2: 1s97 D:1-240 [98749]
  Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
  protein/DNA complex; complexed with ca, dct
Domain(s) for 1s9f:
1. Domain d1s9fa2: 1s9f A:1-240 [118914]
  Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, ddy, mg
2. Domain d1s9fb2: 1s9f B:1-240 [118916]
  Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, ddy, mg
3. Domain d1s9fc2: 1s9f C:1-240 [118918]
  Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, ddy, mg
4. Domain d1s9fd2: 1s9f D:1-240 [118920]
  Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, ddy, mg
Domain(s) for 2ago:
- Domain d2agoa2: 2ago A:2-240 [126730]
  Other proteins in same PDB: d2agoa1
  automatically matched to d1jx4a2
  protein/DNA complex; complexed with ca, mg, pop
Domain(s) for 2agp:
1. Domain d2agpa2: 2agp A:2-240 [126732]
  Other proteins in same PDB: d2agpa1, d2agpb1
  automatically matched to d1jx4a2
  protein/DNA complex; complexed with ca, dgt, mg
2. Domain d2agpb2: 2agp B:2-240 [126734]
  Other proteins in same PDB: d2agpa1, d2agpb1
  automatically matched to d1jx4a2
  protein/DNA complex; complexed with ca, dgt, mg
Domain(s) for 2agq:
- Domain d2agqa2: 2agq A:2-240 [126736]
  Other proteins in same PDB: d2agqa1
  automatically matched to d1jx4a2
  protein/DNA complex; complexed with ca, dtp, mg
Domain(s) for 2asd:
1. Domain d2asda2: 2asd A:2-240 [127249]
  Other proteins in same PDB: d2asda1, d2asda3, d2asdb1, d2asdb3
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dcp
2. Domain d2asdb2: 2asd B:1002-1240 [127251]
  Other proteins in same PDB: d2asda1, d2asda3, d2asdb1, d2asdb3
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 2asj:
1. Domain d2asja2: 2asj A:2-240 [127255]
  Other proteins in same PDB: d2asja1, d2asja3, d2asjb1, d2asjb3
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca
2. Domain d2asjb2: 2asj B:1002-1240 [127257]
  Other proteins in same PDB: d2asja1, d2asja3, d2asjb1, d2asjb3
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca
Domain(s) for 2asl:
1. Domain d2asla2: 2asl A:2-240 [127259]
  Other proteins in same PDB: d2asla1, d2asla3, d2aslb1, d2aslb3
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca
2. Domain d2aslb2: 2asl B:1002-1240 [127261]
  Other proteins in same PDB: d2asla1, d2asla3, d2aslb1, d2aslb3
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca
Domain(s) for 2bq3:
- Domain d2bq3a2: 2bq3 A:1-240 [128960]
  Other proteins in same PDB: d2bq3a1
  automated match to d2v4ra1
  complexed with ca
Domain(s) for 2bqr:
- Domain d2bqra2: 2bqr A:1-240 [128966]
  Other proteins in same PDB: d2bqra1
  automated match to d2v4ra1
  complexed with ca, dtp
Domain(s) for 2bqu:
- Domain d2bqua2: 2bqu A:1-240 [128968]
  Other proteins in same PDB: d2bqua1
  automated match to d2v4ra1
  complexed with ca, dad
Domain(s) for 2br0:
- Domain d2br0a2: 2br0 A:1-240 [128974]
  Other proteins in same PDB: d2br0a1
  automated match to d2v4ra1
  complexed with ca, dg
Domain(s) for 2ia6:
1. Domain d2ia6a1: 2ia6 A:1-240 [204760]
  Other proteins in same PDB: d2ia6a2, d2ia6b2
  automated match to d1jx4a2
  protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
2. Domain d2ia6b1: 2ia6 B:1-240 [204762]
  Other proteins in same PDB: d2ia6a2, d2ia6b2
  automated match to d1jx4a2
  protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
Domain(s) for 2ibk:
- Domain d2ibka2: 2ibk A:1-240 [147599]
  Other proteins in same PDB: d2ibka1
  automated match to d1jx4a2
  protein/DNA complex; complexed with bap, ca, edo, gol, pop
Domain(s) for 2imw:
- Domain d2imwp2: 2imw P:1-240 [137520]
  Other proteins in same PDB: d2imwp1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dds, edo
Domain(s) for 2r8g:
- Domain d2r8ga2: 2r8g A:1-240 [151718]
  Other proteins in same PDB: d2r8ga1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dgt
Domain(s) for 2r8h:
- Domain d2r8ha2: 2r8h A:1-240 [151720]
  Other proteins in same PDB: d2r8ha1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dgt
Domain(s) for 2r8i:
- Domain d2r8ia2: 2r8i A:1-240 [151722]
  Other proteins in same PDB: d2r8ia1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dtp
Domain(s) for 2rdi:
- Domain d2rdia2: 2rdi A:1-240 [151929]
  Other proteins in same PDB: d2rdia1
  automated match to d1jx4a2
  protein/DNA complex; complexed with gol, peg
Domain(s) for 2rdj:
1. Domain d2rdja2: 2rdj A:1-240 [151931]
  Other proteins in same PDB: d2rdja1, d2rdjb1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, gol, tmp
2. Domain d2rdjb2: 2rdj B:1-240 [151933]
  Other proteins in same PDB: d2rdja1, d2rdjb1
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, gol, tmp
Domain(s) for 2xcp:
1. Domain d2xcpa1: 2xcp A:1-240 [244481]
  Other proteins in same PDB: d2xcpa2, d2xcpb2, d2xcpb3
  automated match to d2v4ra1
  protein/DNA complex; protein/RNA complex; complexed with dcp, mg
2. Domain d2xcpb1: 2xcp B:1-240 [244483]
  Other proteins in same PDB: d2xcpa2, d2xcpb2, d2xcpb3
  automated match to d2v4ra1
  protein/DNA complex; protein/RNA complex; complexed with dcp, mg
Domain(s) for 3fds:
- Domain d3fdsa1: 3fds A:1-240 [209860]
  Other proteins in same PDB: d3fdsa2, d3fdsd1, d3fdsd2
  automated match to d1n48a2
  protein/DNA complex; complexed with 1pe, edo, gol, peg, pge
Domain(s) for 3pr4:
- Domain d3pr4a1: 3pr4 A:1-240 [233265]
  Other proteins in same PDB: d3pr4a2
  automated match to d1jx4a2
  protein/DNA complex; complexed with atp, ca; mutant
Domain(s) for 3pr5:
- Domain d3pr5b1: 3pr5 B:1-240 [233267]
  automated match to d1jx4a2
  protein/DNA complex; complexed with atp, ca; mutant
Domain(s) for 3qz7:
- Domain d3qz7a1: 3qz7 A:1-240 [233379]
  Other proteins in same PDB: d3qz7a2
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 3qz8:
- Domain d3qz8a1: 3qz8 A:1-240 [233381]
  Other proteins in same PDB: d3qz8a2
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dcp
Domain(s) for 4juz:
- Domain d4juza1: 4juz A:1-240 [235049]
  Other proteins in same PDB: d4juza2
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dgt
Domain(s) for 4jv0:
- Domain d4jv0a1: 4jv0 A:1-240 [235051]
  Other proteins in same PDB: d4jv0a2
  automated match to d1jx4a2
  protein/DNA complex; complexed with ca, dtp
Domain(s) for 4jv1:
- Domain d4jv1a1: 4jv1 A:1-240 [253114]
  Other proteins in same PDB: d4jv1a2
  automated match to d4juza1
  protein/DNA complex; complexed with ca, dgt
Domain(s) for 4jv2:
- Domain d4jv2a1: 4jv2 A:1-240 [253116]
  Other proteins in same PDB: d4jv2a2
  automated match to d4juza1
  protein/DNA complex; complexed with ca, dtp

More info for Species Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] from e.8.1.7 DinB homolog (DBH)

Timeline for Species Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] from e.8.1.7 DinB homolog (DBH):

Species Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] from e.8.1.7 DinB homolog (DBH) first appeared in SCOP 1.67, called Species Archaeon Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] from e.8.1.7 DinB homolog (DBH)
Species Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] from e.8.1.7 DinB homolog (DBH) appears in SCOPe 2.07