SCOPe 2.08: Protein: DinB homolog (DBH)

Lineage for Protein: DinB homolog (DBH)

Root: SCOPe 2.08
Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (5 proteins)
contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)
in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain

Protein DinB homolog (DBH) [100889] (3 species)

Species:

Sulfolobus acidocaldarius [TaxId:2285] [160954] (3 PDB entries)
1. Domain for 3bq0:
  - Domain d3bq0a2: 3bq0 A:1-241 [155492]
    Other proteins in same PDB: d3bq0a1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
2. Domain for 3bq1:
  - Domain d3bq1a2: 3bq1 A:1-241 [155494]
    Other proteins in same PDB: d3bq1a1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dg3
3. Domain for 3bq2:
  - Domain d3bq2a2: 3bq2 A:1-241 [155496]
    Other proteins in same PDB: d3bq2a1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
Sulfolobus solfataricus [TaxId:2287] [100891] (3 PDB entries)
1. Domain for 1im4:
  - Domain d1im4a1: 1im4 A:2-205 [62581]
    Other proteins in same PDB: d1im4a2
    "palm" and "fingers" domains only
    complexed with so4
2. Domains for 1k1q:
  1. Domain d1k1qa2: 1k1q A:1-239 [90383]
    Other proteins in same PDB: d1k1qa1, d1k1qb1
  2. Domain d1k1qb2: 1k1q B:1-239 [90385]
    Other proteins in same PDB: d1k1qa1, d1k1qb1
3. Domain for 1k1s:
  - Domain d1k1sa2: 1k1s A:1-239 [90387]
    Other proteins in same PDB: d1k1sa1
Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100890] (41 PDB entries)
1. Domain for 1jx4:
  - Domain d1jx4a2: 1jx4 A:1-240 [90379]
    Other proteins in same PDB: d1jx4a1
    protein/DNA complex; complexed with adi, ca, mg
2. Domain for 1jxl:
  - Domain d1jxla2: 1jxl A:1-240 [90381]
    Other proteins in same PDB: d1jxla1
    protein/DNA complex; complexed with ca, dg3, edo, mg
3. Domain for 1n48:
  - Domain d1n48a2: 1n48 A:1-240 [91616]
    Other proteins in same PDB: d1n48a1
    protein/DNA complex; complexed with atp, ca
4. Domains for 1n56:
  1. Domain d1n56a2: 1n56 A:1-240 [91681]
    Other proteins in same PDB: d1n56a1, d1n56b1
    protein/DNA complex; complexed with atp, ca, mg
  2. Domain d1n56b2: 1n56 B:1-240 [91683]
    Other proteins in same PDB: d1n56a1, d1n56b1
    protein/DNA complex; complexed with atp, ca, mg
5. Domain for 1pm0:
  - Domain d1pm0a1: 1pm0 A:1-240 [302894]
    Other proteins in same PDB: d1pm0a2
    automated match to d1jx4a2
    complexed with atp, ca
6. Domain for 1ryr:
  - Domain d1ryra2: 1ryr A:1-240 [98110]
    Other proteins in same PDB: d1ryra1
    protein/DNA complex; complexed with atp, ca
7. Domains for 1rys:
  1. Domain d1rysa2: 1rys A:1-240 [98112]
    Other proteins in same PDB: d1rysa1, d1rysb1
    protein/DNA complex; complexed with atp, ca, edo, na
  2. Domain d1rysb2: 1rys B:1-240 [98114]
    Other proteins in same PDB: d1rysa1, d1rysb1
    protein/DNA complex; complexed with atp, ca, edo, na
8. Domains for 1s0m:
  1. Domain d1s0ma2: 1s0m A:1-240 [98291]
    Other proteins in same PDB: d1s0ma1, d1s0mb1
    protein/DNA complex; complexed with bap, ca, dtp, mg
  2. Domain d1s0mb2: 1s0m B:1-240 [98293]
    Other proteins in same PDB: d1s0ma1, d1s0mb1
    protein/DNA complex; complexed with bap, ca, dtp, mg
9. Domain for 1s0n:
  - Domain d1s0na2: 1s0n A:1-240 [98295]
    Other proteins in same PDB: d1s0na1
    protein/DNA complex; complexed with ca, dcp
10. Domains for 1s0o:
  1. Domain d1s0oa2: 1s0o A:1-240 [98297]
    Other proteins in same PDB: d1s0oa1, d1s0ob1
    protein/DNA complex; complexed with ca, mg, ttp
  2. Domain d1s0ob2: 1s0o B:1-240 [98299]
    Other proteins in same PDB: d1s0oa1, d1s0ob1
    protein/DNA complex; complexed with ca, mg, ttp
11. Domain for 1s10:
  - Domain d1s10a2: 1s10 A:1-240 [98328]
    Other proteins in same PDB: d1s10a1
    protein/DNA complex; complexed with ca, dcp
12. Domains for 1s97:
  1. Domain d1s97a2: 1s97 A:1-240 [98743]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
  2. Domain d1s97b2: 1s97 B:1-240 [98745]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
  3. Domain d1s97c2: 1s97 C:1-240 [98747]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
  4. Domain d1s97d2: 1s97 D:1-240 [98749]
    Other proteins in same PDB: d1s97a1, d1s97b1, d1s97c1, d1s97d1
    protein/DNA complex; complexed with ca, dct
13. Domains for 1s9f:
  1. Domain d1s9fa2: 1s9f A:1-240 [118914]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
  2. Domain d1s9fb2: 1s9f B:1-240 [118916]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
  3. Domain d1s9fc2: 1s9f C:1-240 [118918]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
  4. Domain d1s9fd2: 1s9f D:1-240 [118920]
    Other proteins in same PDB: d1s9fa1, d1s9fb1, d1s9fc1, d1s9fd1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, ddy, mg
14. Domain for 2ago:
  - Domain d2agoa2: 2ago A:2-240 [126730]
    Other proteins in same PDB: d2agoa1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, mg, pop
15. Domains for 2agp:
  1. Domain d2agpa2: 2agp A:2-240 [126732]
    Other proteins in same PDB: d2agpa1, d2agpb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt, mg
  2. Domain d2agpb2: 2agp B:2-240 [126734]
    Other proteins in same PDB: d2agpa1, d2agpb1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dgt, mg
16. Domain for 2agq:
  - Domain d2agqa2: 2agq A:2-240 [126736]
    Other proteins in same PDB: d2agqa1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, dtp, mg
17. Domains for 2asd:
  1. Domain d2asda2: 2asd A:2-240 [127249]
    Other proteins in same PDB: d2asda1, d2asda3, d2asdb1, d2asdb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
  2. Domain d2asdb2: 2asd B:1002-1240 [127251]
    Other proteins in same PDB: d2asda1, d2asda3, d2asdb1, d2asdb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
18. Domains for 2asj:
  1. Domain d2asja2: 2asj A:2-240 [127255]
    Other proteins in same PDB: d2asja1, d2asja3, d2asjb1, d2asjb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
  2. Domain d2asjb2: 2asj B:1002-1240 [127257]
    Other proteins in same PDB: d2asja1, d2asja3, d2asjb1, d2asjb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
19. Domains for 2asl:
  1. Domain d2asla2: 2asl A:2-240 [127259]
    Other proteins in same PDB: d2asla1, d2asla3, d2aslb1, d2aslb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
  2. Domain d2aslb2: 2asl B:1002-1240 [127261]
    Other proteins in same PDB: d2asla1, d2asla3, d2aslb1, d2aslb3
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca
20. Domain for 2bq3:
  - Domain d2bq3a2: 2bq3 A:1-240 [128960]
    Other proteins in same PDB: d2bq3a1
    automated match to d2v4ra1
    complexed with ca
21. Domain for 2bqr:
  - Domain d2bqra2: 2bqr A:1-240 [128966]
    Other proteins in same PDB: d2bqra1
    automated match to d2v4ra1
    complexed with ca, dtp
22. Domain for 2bqu:
  - Domain d2bqua2: 2bqu A:1-240 [128968]
    Other proteins in same PDB: d2bqua1
    automated match to d2v4ra1
    complexed with ca, dad
23. Domain for 2br0:
  - Domain d2br0a2: 2br0 A:1-240 [128974]
    Other proteins in same PDB: d2br0a1
    automated match to d2v4ra1
    complexed with ca, dg
24. Domains for 2ia6:
  1. Domain d2ia6a1: 2ia6 A:1-240 [204760]
    Other proteins in same PDB: d2ia6a2, d2ia6b2
    automated match to d1jx4a2
    protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
  2. Domain d2ia6b1: 2ia6 B:1-240 [204762]
    Other proteins in same PDB: d2ia6a2, d2ia6b2
    automated match to d1jx4a2
    protein/DNA complex; complexed with atp, bap, ca, edo, gol, po4
25. Domain for 2ibk:
  - Domain d2ibka2: 2ibk A:1-240 [147599]
    Other proteins in same PDB: d2ibka1
    automated match to d1jx4a2
    protein/DNA complex; complexed with bap, ca, edo, gol, pop
26. Domain for 2imw:
  - Domain d2imwp2: 2imw P:1-240 [137520]
    Other proteins in same PDB: d2imwp1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dds, edo
27. Domain for 2r8g:
  - Domain d2r8ga2: 2r8g A:1-240 [151718]
    Other proteins in same PDB: d2r8ga1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
28. Domain for 2r8h:
  - Domain d2r8ha2: 2r8h A:1-240 [151720]
    Other proteins in same PDB: d2r8ha1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
29. Domain for 2r8i:
  - Domain d2r8ia2: 2r8i A:1-240 [151722]
    Other proteins in same PDB: d2r8ia1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dtp
30. Domain for 2rdi:
  - Domain d2rdia2: 2rdi A:1-240 [151929]
    Other proteins in same PDB: d2rdia1
    automated match to d1jx4a2
    protein/DNA complex; complexed with gol, peg
31. Domains for 2rdj:
  1. Domain d2rdja2: 2rdj A:1-240 [151931]
    Other proteins in same PDB: d2rdja1, d2rdjb1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, gol, tmp
  2. Domain d2rdjb2: 2rdj B:1-240 [151933]
    Other proteins in same PDB: d2rdja1, d2rdjb1
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, gol, tmp
32. Domains for 2xcp:
  1. Domain d2xcpa1: 2xcp A:1-240 [244481]
    Other proteins in same PDB: d2xcpa2, d2xcpb2, d2xcpb3
    automated match to d2v4ra1
    protein/DNA complex; protein/RNA complex; complexed with dcp, mg
  2. Domain d2xcpb1: 2xcp B:1-240 [244483]
    Other proteins in same PDB: d2xcpa2, d2xcpb2, d2xcpb3
    automated match to d2v4ra1
    protein/DNA complex; protein/RNA complex; complexed with dcp, mg
33. Domain for 3fds:
  - Domain d3fdsa1: 3fds A:1-240 [209860]
    Other proteins in same PDB: d3fdsa2, d3fdsd1, d3fdsd2
    automated match to d1n48a2
    protein/DNA complex; complexed with 1pe, edo, gol, peg, pge
34. Domain for 3pr4:
  - Domain d3pr4a1: 3pr4 A:1-240 [233265]
    Other proteins in same PDB: d3pr4a2
    automated match to d1jx4a2
    protein/DNA complex; complexed with atp, ca; mutant
35. Domain for 3pr5:
  - Domain d3pr5b1: 3pr5 B:1-240 [233267]
    automated match to d1jx4a2
    protein/DNA complex; complexed with atp, ca; mutant
36. Domain for 3qz7:
  - Domain d3qz7a1: 3qz7 A:1-240 [233379]
    Other proteins in same PDB: d3qz7a2
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
37. Domain for 3qz8:
  - Domain d3qz8a1: 3qz8 A:1-240 [233381]
    Other proteins in same PDB: d3qz8a2
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dcp
38. Domain for 4juz:
  - Domain d4juza1: 4juz A:1-240 [235049]
    Other proteins in same PDB: d4juza2
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dgt
39. Domain for 4jv0:
  - Domain d4jv0a1: 4jv0 A:1-240 [235051]
    Other proteins in same PDB: d4jv0a2
    automated match to d1jx4a2
    protein/DNA complex; complexed with ca, dtp
40. Domain for 4jv1:
  - Domain d4jv1a1: 4jv1 A:1-240 [253114]
    Other proteins in same PDB: d4jv1a2
    automated match to d4juza1
    protein/DNA complex; complexed with ca, dgt
41. Domain for 4jv2:
  - Domain d4jv2a1: 4jv2 A:1-240 [253116]
    Other proteins in same PDB: d4jv2a2
    automated match to d4juza1
    protein/DNA complex; complexed with ca, dtp

More info for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain

Timeline for Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain:

Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain first appeared in SCOP 1.67
Protein DinB homolog (DBH) from e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain appears in SCOPe 2.07