PDB entry 2asd

View 2asd on RCSB PDB site
Description: oxoG-modified Insertion Ternary Complex
Class: transferase/DNA
Keywords: DNA polymerase, 8-oxoguanine, Y-family, lesion bypass, transferase-DNA COMPLEX
Deposited on 2005-08-23, released 2006-01-10
The last revision prior to the SCOPe 2.08 freeze date was dated 2011-07-13, with a file datestamp of 2011-05-08.
Experiment type: XRAY
Resolution: 1.95 Å
R-factor: 0.226
AEROSPACI score: 0.41 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: dbh, dpo4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97W02
      • cloning artifact (8)
    Domains in SCOPe 2.08: d2asda1, d2asda2, d2asda3
  • Chain 'B':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:2287]
    Gene: dbh, dpo4
    Database cross-references and differences (RAF-indexed):
    • Uniprot Q97W02 (9-End)
      • cloning artifact (8)
    Domains in SCOPe 2.08: d2asdb1, d2asdb2, d2asdb3
  • Chain 'D':
    Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
  • Chain 'E':
    Compound: 5'-d(*cp*t*ap*ap*cp*(8og)p*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
  • Chain 'H':
    Compound: 5'-d(*gp*gp*tp*tp*gp*gp*ap*tp*gp*gp*tp*ap*(ddg))-3'
  • Chain 'J':
    Compound: 5'-d(*cp*t*ap*ap*cp*(8og)p*cp*tp*ap*cp*cp*ap*tp*cp*cp*ap*ap*cp*c)-3'
  • Heterogens: CA, DCP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >2asdA (A:)
gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

    Sequence, based on observed residues (ATOM records): (download) 
    >2asdA (A:)
givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >2asdB (B:)
gshmgggggivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyeark
fgvkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldis
dkvrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevk
rlireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislarde
ynepirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavted
ldivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt

    Sequence, based on observed residues (ATOM records): (download) 
    >2asdB (B:)
givlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi

  • Chain 'D':
    No sequence available.

  • Chain 'E':
    No sequence available.

  • Chain 'H':
    No sequence available.

  • Chain 'J':
    No sequence available.