PDB entry 2r8i
View 2r8i on RCSB PDB site
Description: Selectivity of Nucleoside Triphosphate Incorporation Opposite 1,N2-Propanodeoxyguanosine (PdG) by the Sulfolobus solfataricus DNA Polymerase Dpo4 Polymerase
Class: replication, transferase/DNA
Keywords: exocyclic adducts, replication bypass, crystallography, translesion, polymerase, frameshifting, REPLICATION, TRANSFERASE/DNA COMPLEX
Deposited on
2007-09-10, released
2008-07-22
The last revision prior to the SCOPe 2.08 freeze date was dated
2009-02-24, with a file datestamp of
2009-02-20.
Experiment type: XRAY
Resolution: 2.38 Å
R-factor: 0.22
AEROSPACI score: 0.32
(click here for full SPACI score report)
Chains and heterogens:
- Chain 'A':
Compound: DNA polymerase IV
Species: Sulfolobus solfataricus [TaxId:2287]
Gene: dbh, dpo4
Database cross-references and differences (RAF-indexed):
Domains in SCOPe 2.08: d2r8ia1, d2r8ia2 - Chain 'P':
Compound: DNA (5'-d(*dgp*dgp*dgp*dgp*dgp*dap*dap*dgp*dgp*dap*dtp*dtp*dc)-3')
- Chain 'T':
Compound: DNA (5'-d(*dtp*dcp*dap*dtp*(p)p*dgp*dap*dap*dtp*dcp*dcp*dtp*dtp*dcp*dcp*dcp*dcp*dc)-3')
- Heterogens: CA, DTP, HOH
PDB Chain Sequences:
- Chain 'A':
Sequence, based on SEQRES records: (download)
>2r8iA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfieaigldkffdt
Sequence, based on observed residues (ATOM records): (download)
>2r8iA (A:)
mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
tfphgisketaysesvkllqkileederkirrigvrfskfi
- Chain 'P':
No sequence available.
- Chain 'T':
No sequence available.