Lineage for d2agoa2 (2ago A:2-240)

  1. Root: SCOPe 2.08
  2. 3012399Class e: Multi-domain proteins (alpha and beta) [56572] (74 folds)
  3. 3016464Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
    divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
  4. 3016465Superfamily e.8.1: DNA/RNA polymerases [56672] (9 families) (S)
    "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
  5. 3018090Family e.8.1.7: Lesion bypass DNA polymerase (Y-family), catalytic domain [100888] (5 proteins)
    contains a distinct 'fingers' domain possibly related to the C-terminal subdomain of hypothetical protein Ta1206 (1qw2)
    in the multi-domain class (e), this applies to domains with different numbers of (sub)domains than the most common domain
  6. 3018091Protein DinB homolog (DBH) [100889] (3 species)
  7. 3018101Species Sulfolobus solfataricus, DNA polymerase IV [TaxId:2287] [100890] (41 PDB entries)
  8. 3018153Domain d2agoa2: 2ago A:2-240 [126730]
    Other proteins in same PDB: d2agoa1
    automatically matched to d1jx4a2
    protein/DNA complex; complexed with ca, mg, pop

Details for d2agoa2

PDB Entry: 2ago (more details), 2.85 Å

PDB Description: Fidelity of Dpo4: effect of metal ions, nucleotide selection and pyrophosphorolysis
PDB Compounds: (A:) DNA polymerase IV

SCOPe Domain Sequences for d2agoa2:

Sequence; same for both SEQRES and ATOM records: (download)

>d2agoa2 e.8.1.7 (A:2-240) DinB homolog (DBH) {Sulfolobus solfataricus, DNA polymerase IV [TaxId: 2287]}
ivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagipi
veakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyrea
ynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldia
dvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr

SCOPe Domain Coordinates for d2agoa2:

Click to download the PDB-style file with coordinates for d2agoa2.
(The format of our PDB-style files is described here.)

Timeline for d2agoa2: