PDB entry 4jv0

View 4jv0 on RCSB PDB site
Description: Ring-Opening of the -OH-PdG Adduct in Ternary Complexes with the Sulfolobus solfataricus DNA polymerase Dpo4
Class: transferase/DNA
Keywords: ternary complex of dpo4-DNA-datp, DNA polymerase, DNA adduct, transferase-DNA complex
Deposited on 2013-03-25, released 2013-08-28
The last revision prior to the SCOPe 2.08 freeze date was dated 2013-10-09, with a file datestamp of 2013-10-04.
Experiment type: XRAY
Resolution: 2.95 Å
R-factor: 0.2
AEROSPACI score: 0.24 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: DNA polymerase IV
    Species: Sulfolobus solfataricus [TaxId:273057]
    Gene: DBH, DPO4, SSO2448
    Database cross-references and differences (RAF-indexed): Domains in SCOPe 2.08: d4jv0a1, d4jv0a2
  • Chain 'B':
    Compound: DNA (5'-d(p*tp*(kag)p*gp*ap*ap*tp*cp*cp*tp*tp*cp*cp*cp*cp*c)-3')
  • Chain 'C':
    Compound: DNA (5'-d(*gp*gp*gp*gp*gp*ap*ap*gp*gp*ap*tp*tp*cp*c)-3')
  • Heterogens: DTP, CA, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download)
    >4jv0A (A:)
    hhhhhhmivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfg
    vkagipiveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdk
    vrdyreaynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrl
    ireldiadvpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeyn
    epirtrvrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedld
    ivsrgrtfphgisketaysesvkllqkileederkirrigvrfskfi
    

    Sequence, based on observed residues (ATOM records): (download)
    >4jv0A (A:)
    mivlfvdfdyfyaqveevlnpslkgkpvvvcvfsgrfedsgavatanyearkfgvkagip
    iveakkilpnavylpmrkevyqqvssrimnllreysekieiasideayldisdkvrdyre
    aynlgleiknkilekekitvtvgisknkvfakiaadmakpngikviddeevkrlireldi
    advpgignitaeklkklginklvdtlsiefdklkgmigeakakylislardeynepirtr
    vrksigrivtmkrnsrnleeikpylfraieesyykldkripkaihvvavtedldivsrgr
    tfphgisketaysesvkllqkileederkirrigvrfskfi
    

  • Chain 'B':
    No sequence available.

  • Chain 'C':
    No sequence available.