Species:

1. Feline immunodeficiency virus (isolate petaluma) [TaxId:11674] [187795] (1 PDB entry)

   • Domain for 2hah:

     • Domain d2haha_: 2hah A: [165035] automated match to d1b11a_ complexed with 3tl

2. Feline immunodeficiency virus [TaxId:11673] [189983] (2 PDB entries)

   1. Domains for 3ogp:

      1. Domain d3ogpa_: 3ogp A: [183019] automated match to d6fiva_ complexed with 017, dms

      2. Domain d3ogpb_: 3ogp B: [183020] automated match to d6fiva_ complexed with 017, dms

   2. Domains for 3ogq:

      1. Domain d3ogqa_: 3ogq A: [183021] automated match to d6fiva_ complexed with ab1, dms

      2. Domain d3ogqb_: 3ogq B: [183022] automated match to d6fiva_ complexed with ab1, dms

3. Hiv-1 m:b_arv2/sf2 [TaxId:11685] [188968] (6 PDB entries)

   1. Domains for 3ekq:

      1. Domain d3ekqa_: 3ekq A: [175025] automated match to d1k6ca_ complexed with po4, roc

      2. Domain d3ekqb_: 3ekq B: [175026] automated match to d1k6ca_ complexed with po4, roc

   2. Domains for 3el4:

      1. Domain d3el4a_: 3el4 A: [175045] automated match to d1k6ca_ complexed with act, roc

      2. Domain d3el4b_: 3el4 B: [175046] automated match to d1k6ca_ complexed with act, roc

   3. Domains for 3el9:

      1. Domain d3el9a_: 3el9 A: [175049] automated match to d1k6ca_ complexed with act, dr7, po4

      2. Domain d3el9b_: 3el9 B: [175050] automated match to d1k6ca_ complexed with act, dr7, po4

   4. Domains for 3em3:

      1. Domain d3em3a_: 3em3 A: [175073] automated match to d1kzka_ complexed with 478, act

      2. Domain d3em3b_: 3em3 B: [175074] automated match to d1kzka_ complexed with 478, act

   5. Domains for 3em4:

      1. Domain d3em4a_: 3em4 A: [175075] automated match to d1kzka_ complexed with dr7, po4

      2. Domain d3em4b_: 3em4 B: [175076] automated match to d1kzka_ complexed with dr7, po4

      3. Domain d3em4u_: 3em4 U: [175077] automated match to d1kzka_ complexed with dr7, po4

      4. Domain d3em4v_: 3em4 V: [175078] automated match to d1kzka_ complexed with dr7, po4

   6. Domains for 3em6:

      1. Domain d3em6a_: 3em6 A: [175083] automated match to d1kzka_ complexed with 017, act, po4; mutant

      2. Domain d3em6b_: 3em6 B: [175084] automated match to d1kzka_ complexed with 017, act, po4; mutant

4. Human immunodeficiency virus 1 (z2/cdc-z34 isolate) [TaxId:11683] [189840] (10 PDB entries)

   1. Domains for 2xye:

      1. Domain d2xyea_: 2xye A: [170478] automated match to d1k6ca_ complexed with cxg

      2. Domain d2xyeb_: 2xye B: [170479] automated match to d1k6ca_ complexed with cxg

   2. Domains for 2xyf:

      1. Domain d2xyfa_: 2xyf A: [170480] automated match to d1k6ca_ complexed with g40

      2. Domain d2xyfb_: 2xyf B: [170481] automated match to d1k6ca_ complexed with g40

   3. Domains for 5agz:

      1. Domain d5agza_: 5agz A: [272187] automated match to d2xyfa_ complexed with cl, qha

      2. Domain d5agzb_: 5agz B: [272189] automated match to d2xyfa_ complexed with cl, qha

   4. Domains for 5ah6:

      1. Domain d5ah6a_: 5ah6 A: [272186] automated match to d2xyfa_ complexed with c7u, cl

      2. Domain d5ah6b_: 5ah6 B: [272185] automated match to d2xyfa_ complexed with c7u, cl

   5. Domains for 5ah7:

      1. Domain d5ah7a_: 5ah7 A: [272177] automated match to d2xyfa_ complexed with c7j, cl

      2. Domain d5ah7b_: 5ah7 B: [272178] automated match to d2xyfa_ complexed with c7j, cl

   6. Domains for 5ah8:

      1. Domain d5ah8a_: 5ah8 A: [272194] automated match to d2xyfa_ complexed with c7w, cl

      2. Domain d5ah8b_: 5ah8 B: [272193] automated match to d2xyfa_ complexed with c7w, cl

   7. Domains for 5ah9:

      1. Domain d5ah9a_: 5ah9 A: [272182] automated match to d2xyfa_ complexed with c7l, cl

      2. Domain d5ah9b_: 5ah9 B: [272190] automated match to d2xyfa_ complexed with c7l, cl

   8. Domains for 5aha:

      1. Domain d5ahaa_: 5aha A: [272181] automated match to d2xyfa_ complexed with cl, zlp

      2. Domain d5ahab_: 5aha B: [272184] automated match to d2xyfa_ complexed with cl, zlp

   9. Domains for 5ahb:

      1. Domain d5ahba_: 5ahb A: [272188] automated match to d2xyfa_ complexed with cl, j5l

      2. Domain d5ahbb_: 5ahb B: [272179] automated match to d2xyfa_ complexed with cl, j5l

   10. Domains for 5ahc:

       1. Domain d5ahca_: 5ahc A: [272183] automated match to d2xyfa_ complexed with cl, vxl

       2. Domain d5ahcb_: 5ahc B: [272180] automated match to d2xyfa_ complexed with cl, vxl

5. Human immunodeficiency virus 1 [TaxId:11676] [187327] (25 PDB entries)

   1. Domains for 1z8c:

      1. Domain d1z8ca_: 1z8c A: [162400] automated match to d1lzqa_ complexed with 0zs, so4; mutant

      2. Domain d1z8cb_: 1z8c B: [162401] automated match to d1lzqa_ complexed with 0zs, so4; mutant

   2. Domains for 2b60:

      1. Domain d2b60a_: 2b60 A: [162995] automated match to d1sgua_ complexed with gol, rit; mutant

      2. Domain d2b60b_: 2b60 B: [162996] automated match to d1sgua_ complexed with gol, rit; mutant

   3. Domains for 2b7z:

      1. Domain d2b7za_: 2b7z A: [163000] automated match to d1sgua_ complexed with mk1; mutant

      2. Domain d2b7zb_: 2b7z B: [163001] automated match to d1sgua_ complexed with mk1; mutant

   4. Domains for 2f3k:

      1. Domain d2f3ka_: 2f3k A: [164265] automated match to d1kzka_ complexed with po4, ro1

      2. Domain d2f3kb_: 2f3k B: [164266] automated match to d1kzka_ complexed with po4, ro1

   5. Domains for 2fdd:

      1. Domain d2fdda_: 2fdd A: [164334] automated match to d1rpia_ complexed with 385

      2. Domain d2fddb_: 2fdd B: [164335] automated match to d1rpia_ complexed with 385

   6. Domains for 2fle:

      1. Domain d2flea_: 2fle A: [164426] automated match to d1hvsa_ complexed with ai, gol; mutant

      2. Domain d2fleb_: 2fle B: [164427] automated match to d1hvsa_ complexed with ai, gol; mutant

   7. Domain for 2g69:

      • Domain d2g69a_: 2g69 A: [164585] automated match to d1fgcc_ mutant

   8. Domain for 2hb2:

      • Domain d2hb2a_: 2hb2 A: [165042] automated match to d1k6ca_ mutant

   9. Domains for 2hc0:

      1. Domain d2hc0a_: 2hc0 A: [165044] automated match to d1k6ca_ complexed with ab2, br; mutant

      2. Domain d2hc0b_: 2hc0 B: [165045] automated match to d1k6ca_ complexed with ab2, br; mutant

   10. Domains for 2j9j:

       1. Domain d2j9ja_: 2j9j A: [165954] automated match to d1b6ka_ protein/DNA complex; protein/RNA complex; complexed with act, gol, so4

       2. Domain d2j9jb_: 2j9j B: [165955] automated match to d1b6ka_ protein/DNA complex; protein/RNA complex; complexed with act, gol, so4

   11. Domains for 2je4:

       1. Domain d2je4a_: 2je4 A: [166142] automated match to d1b6ka_ complexed with act, gol, so4

       2. Domain d2je4b_: 2je4 B: [166143] automated match to d1b6ka_ complexed with act, gol, so4

   12. Domains for 2p3d:

       1. Domain d2p3da_: 2p3d A: [166995] automated match to d1a8ga_ complexed with 3tl; mutant

       2. Domain d2p3db_: 2p3d B: [166996] automated match to d1a8ga_ complexed with 3tl; mutant

   13. Domains for 2qd6:

       1. Domain d2qd6a_: 2qd6 A: [167535] automated match to d1fgcc_ complexed with 065, act, cl, na; mutant

       2. Domain d2qd6b_: 2qd6 B: [167536] automated match to d1fgcc_ complexed with 065, act, cl, na; mutant

   14. Domains for 3zps:

       1. Domain d3zpsa_: 3zps A: [228908] automated match to d2wl0a_ complexed with cl, eqm

       2. Domain d3zpsb_: 3zps B: [228911] automated match to d2wl0a_ complexed with cl, eqm

   15. Domains for 3zpt:

       1. Domain d3zpta_: 3zpt A: [228910] automated match to d2wl0a_ complexed with cl, m8y

       2. Domain d3zptb_: 3zpt B: [228913] automated match to d2wl0a_ complexed with cl, m8y

   16. Domains for 3zpu:

       1. Domain d3zpua_: 3zpu A: [228909] automated match to d2wl0a_ complexed with cl, m8b

       2. Domain d3zpub_: 3zpu B: [228912] automated match to d2wl0a_ complexed with cl, m8b

   17. Domains for 4njs:

       1. Domain d4njsa_: 4njs A: [238261] automated match to d1z8ca_ complexed with g08

       2. Domain d4njsb_: 4njs B: [263147] automated match to d4njsa_ complexed with g08

       3. Domain d4njsc_: 4njs C: [238262] automated match to d1z8ca_ complexed with g08

       4. Domain d4njsd_: 4njs D: [263148] automated match to d4njsa_ complexed with g08

   18. Domains for 4nju:

       1. Domain d4njua_: 4nju A: [266931] automated match to d4njsa_ complexed with tpv

       2. Domain d4njub_: 4nju B: [266932] automated match to d4njsa_ complexed with tpv

       3. Domain d4njuc_: 4nju C: [266933] automated match to d4njsa_ complexed with tpv

       4. Domain d4njud_: 4nju D: [266934] automated match to d4njsa_ complexed with tpv

   19. Domains for 4rvi:

       1. Domain d4rvia_: 4rvi A: [317155] automated match to d4njsa_ complexed with g52

       2. Domain d4rvib_: 4rvi B: [317128] automated match to d4njsa_ complexed with g52

       3. Domain d4rvic_: 4rvi C: [317084] automated match to d4njsa_ complexed with g52

       4. Domain d4rvid_: 4rvi D: [317071] automated match to d4njsa_ complexed with g52

   20. Domains for 4rvj:

       1. Domain d4rvja_: 4rvj A: [317054] automated match to d4njsa_ complexed with 478

       2. Domain d4rvjb_: 4rvj B: [317077] automated match to d4njsa_ complexed with 478

       3. Domain d4rvjc_: 4rvj C: [317062] automated match to d4njsa_ complexed with 478

       4. Domain d4rvjd_: 4rvj D: [317090] automated match to d4njsa_ complexed with 478

   21. Domains for 4rvx:

       1. Domain d4rvxa_: 4rvx A: [317047] automated match to d4njsa_ complexed with 79g

       2. Domain d4rvxb_: 4rvx B: [317078] automated match to d4njsa_ complexed with 79g

       3. Domain d4rvxc_: 4rvx C: [317059] automated match to d4njsa_ complexed with 79g

       4. Domain d4rvxd_: 4rvx D: [317135] automated match to d4njsa_ complexed with 79g

   22. Domains for 5b18:

       1. Domain d5b18a_: 5b18 A: [315507] automated match to d3oqda_ complexed with act, cl

       2. Domain d5b18b_: 5b18 B: [315265] automated match to d3oqda_ complexed with act, cl

       3. Domain d5b18c_: 5b18 C: [315285] automated match to d3oqda_ complexed with act, cl

       4. Domain d5b18d_: 5b18 D: [315252] automated match to d3oqda_ complexed with act, cl

   23. Domain for 5t2e:

       • Domain d5t2ea_: 5t2e A: [328147] automated match to d4njsa_ complexed with cl

   24. Domains for 5t2z:

       1. Domain d5t2za_: 5t2z A: [328234] automated match to d4njsa_ complexed with 017

       2. Domain d5t2zb_: 5t2z B: [328153] automated match to d4njsa_ complexed with 017

   25. Domain for 5v4y:

       • Domain d5v4ya_: 5v4y A: [339003] automated match to d1mesa_ complexed with 8fm

6. Human immunodeficiency virus type 1 (bru isolate) [TaxId:11686] [188980] (3 PDB entries)

   1. Domains for 3jvw:

      1. Domain d3jvwa_: 3jvw A: [178850] automated match to d1fgcc_ complexed with dmp; mutant

      2. Domain d3jvwb_: 3jvw B: [178851] automated match to d1fgcc_ complexed with dmp; mutant

   2. Domains for 3jvy:

      1. Domain d3jvya_: 3jvy A: [178853] automated match to d1fgcc_ complexed with 017, cl, na; mutant

      2. Domain d3jvyb_: 3jvy B: [178854] automated match to d1fgcc_ complexed with 017, cl, na; mutant

   3. Domains for 3jw2:

      1. Domain d3jw2a_: 3jw2 A: [178857] automated match to d1fgcc_ complexed with 017, cl, na; mutant

      2. Domain d3jw2b_: 3jw2 B: [178858] automated match to d1fgcc_ complexed with 017, cl, na; mutant

7. Human immunodeficiency virus type 1 (z2/cdc-z34 isolate) [TaxId:11683] [189175] (1 PDB entry)

   • Domains for 2wl0:

     1. Domain d2wl0a_: 2wl0 A: [169427] automated match to d1k6ca_ complexed with 5ah

     2. Domain d2wl0b_: 2wl0 B: [169428] automated match to d1k6ca_ complexed with 5ah

8. Human immunodeficiency virus type 1 [TaxId:11686] [193487] (1 PDB entry)

   • Domains for 3ttp:

     1. Domain d3ttpa_: 3ttp A: [193489] automated match to d3u7sa_ complexed with 017, bme, cl

     2. Domain d3ttpb_: 3ttp B: [193488] automated match to d3u7sa_ complexed with 017, bme, cl

9. Human immunodeficiency virus [TaxId:11686] [311331] (1 PDB entry)

   • Domains for 3qoz:

     1. Domain d3qoza_: 3qoz A: [306389] automated match to d2qmpa_ complexed with 017

     2. Domain d3qozb_: 3qoz B: [306390] automated match to d2qmpa_ complexed with 017

10. Human immunodeficiency virus [TaxId:12721] [188065] (13 PDB entries)

    1. Domain for 1w5x:

       • Domain d1w5xb_: 1w5x B: [161358] Other proteins in same PDB: d1w5xa_ automated match to d1ajva_ complexed with be5

    2. Domains for 4a4q:

       1. Domain d4a4qa_: 4a4q A: [192830] automated match to d2xyfa_ complexed with ux9

       2. Domain d4a4qb_: 4a4q B: [192527] automated match to d2xyfa_ complexed with ux9

    3. Domains for 4a6b:

       1. Domain d4a6ba_: 4a6b A: [192228] automated match to d2wl0a_ complexed with qg8

       2. Domain d4a6bb_: 4a6b B: [192229] automated match to d2wl0a_ complexed with qg8

    4. Domains for 4a6c:

       1. Domain d4a6ca_: 4a6c A: [192230] automated match to d2wl0a_ complexed with qg9

       2. Domain d4a6cb_: 4a6c B: [192231] automated match to d2wl0a_ complexed with qg9

    5. Domains for 4coe:

       1. Domain d4coea_: 4coe A: [261497] automated match to d2xyfa_ complexed with cl, m17

       2. Domain d4coeb_: 4coe B: [261494] automated match to d2xyfa_ complexed with cl, m17

    6. Domains for 4cp7:

       1. Domain d4cp7a_: 4cp7 A: [261495] automated match to d2xyfa_ complexed with 9mw, cl

       2. Domain d4cp7b_: 4cp7 B: [261496] automated match to d2xyfa_ complexed with 9mw, cl

    7. Domains for 4cpq:

       1. Domain d4cpqa_: 4cpq A: [261765] automated match to d2xyfa_ complexed with 9mw, cl

       2. Domain d4cpqb_: 4cpq B: [261767] automated match to d2xyfa_ complexed with 9mw, cl

    8. Domains for 4cpr:

       1. Domain d4cpra_: 4cpr A: [261761] automated match to d2xyfa_ complexed with 378, cl

       2. Domain d4cprb_: 4cpr B: [261762] automated match to d2xyfa_ complexed with 378, cl

    9. Domains for 4cps:

       1. Domain d4cpsa_: 4cps A: [261755] automated match to d2xyfa_ complexed with 1t8, cl

       2. Domain d4cpsb_: 4cps B: [261756] automated match to d2xyfa_ complexed with 1t8, cl

    10. Domains for 4cpt:

        1. Domain d4cpta_: 4cpt A: [261764] automated match to d2xyfa_ complexed with 1t8, cl

        2. Domain d4cptb_: 4cpt B: [261760] automated match to d2xyfa_ complexed with 1t8, cl

    11. Domains for 4cpu:

        1. Domain d4cpua_: 4cpu A: [261759] automated match to d2xyfa_ complexed with cl, v78

        2. Domain d4cpub_: 4cpu B: [261766] automated match to d2xyfa_ complexed with cl, v78

    12. Domains for 4cpw:

        1. Domain d4cpwa_: 4cpw A: [261758] automated match to d2xyfa_ complexed with cl, v78

        2. Domain d4cpwb_: 4cpw B: [261757] automated match to d2xyfa_ complexed with cl, v78

    13. Domains for 4cpx:

        1. Domain d4cpxa_: 4cpx A: [261768] automated match to d2xyfa_ complexed with cl, v78

        2. Domain d4cpxb_: 4cpx B: [261763] automated match to d2xyfa_ complexed with cl, v78

11. Mason-pfizer monkey virus [TaxId:11855] [189736] (1 PDB entry)

    • Domains for 3sqf:

      1. Domain d3sqfa_: 3sqf A: [185489] automated match to d1nsoa_

      2. Domain d3sqfb_: 3sqf B: [185490] automated match to d1nsoa_

More info for Protein automated matches from b.50.1.1: Retroviral protease (retropepsin)

Timeline for Protein automated matches from b.50.1.1: Retroviral protease (retropepsin):

• Protein automated matches from b.50.1.1: Retroviral protease (retropepsin) first appeared in SCOPe 2.01
  
• Protein automated matches from b.50.1.1: Retroviral protease (retropepsin) appears in SCOPe 2.05
  
• Protein automated matches from b.50.1.1: Retroviral protease (retropepsin) appears in SCOPe 2.07
  
• Protein automated matches from b.50.1.1: Retroviral protease (retropepsin) appears in the current release, SCOPe 2.08