Lineage for Protein: Homoprotocatechuate 2,3-dioxygenase

  1. Root: SCOPe 2.06
  2. 2152203Class d: Alpha and beta proteins (a+b) [53931] (385 folds)
  3. 2166686Fold d.32: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase [54592] (1 superfamily)
    beta-alpha-beta(3); 2 layers: alpha/beta
  4. 2166687Superfamily d.32.1: Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase [54593] (11 families) (S)
  5. 2166848Family d.32.1.3: Extradiol dioxygenases [54602] (5 protein domains)
    duplication: consists of 2 similar domains with 2 repeats in each
    Similar to the Methylmalonyl-CoA epimerase dimer
  6. 2166939Protein Homoprotocatechuate 2,3-dioxygenase [89886] (2 species)

Species:

  1. 2166940Arthrobacter globiformis [TaxId:1665] [89887] (3 PDB entries)
    1. Domains for 1f1r:
      1. 2166945Domain d1f1ra1: 1f1r A:3-147 [83196]
        complexed with mn
      2. 2166946Domain d1f1ra2: 1f1r A:148-323 [83197]
        complexed with mn
      3. 2166947Domain d1f1rb1: 1f1r B:3-147 [83198]
        complexed with mn
      4. 2166948Domain d1f1rb2: 1f1r B:148-323 [83199]
        complexed with mn
    2. Domains for 1f1u:
      1. 2166941Domain d1f1ua1: 1f1u A:2-147 [83200]
        complexed with mn
      2. 2166942Domain d1f1ua2: 1f1u A:148-323 [83201]
        complexed with mn
      3. 2166943Domain d1f1ub1: 1f1u B:3-147 [83202]
        complexed with mn
      4. 2166944Domain d1f1ub2: 1f1u B:148-323 [83203]
        complexed with mn
    3. Domains for 1f1v:
      1. 2166949Domain d1f1va1: 1f1v A:4-147 [83204]
        complexed with dhy, mn
      2. 2166950Domain d1f1va2: 1f1v A:148-323 [83205]
        complexed with dhy, mn
      3. 2166951Domain d1f1vb1: 1f1v B:4-147 [83206]
        complexed with dhy, mn
      4. 2166952Domain d1f1vb2: 1f1v B:148-323 [83207]
        complexed with dhy, mn
  2. 2166953Brevibacterium fuscum [TaxId:47914] [89888] (17 PDB entries)
    1. Domains for 1f1x:
      1. 2166978Domain d1f1xa1: 1f1x A:4-147 [83208]
        complexed with fel
      2. 2166979Domain d1f1xa2: 1f1x A:148-322 [83209]
        complexed with fel
      3. 2166980Domain d1f1xb1: 1f1x B:4-147 [83210]
        complexed with fel
      4. 2166981Domain d1f1xb2: 1f1x B:148-322 [83211]
        complexed with fel
      5. 2166982Domain d1f1xc1: 1f1x C:4-147 [83212]
        complexed with fel
      6. 2166983Domain d1f1xc2: 1f1x C:148-322 [83213]
        complexed with fel
      7. 2166984Domain d1f1xd1: 1f1x D:4-147 [83214]
        complexed with fel
      8. 2166985Domain d1f1xd2: 1f1x D:148-322 [83215]
        complexed with fel
    2. Domains for 1f1y:
      1. 2167066Domain d1f1ya1: 1f1y A:4-147 [302398]
        automated match to d1q0oa1
        complexed with dhy, of3
      2. 2167067Domain d1f1ya2: 1f1y A:148-359 [302399]
        automated match to d1q0oa2
        complexed with dhy, of3
      3. 2167068Domain d1f1yb1: 1f1y B:4-147 [302400]
        automated match to d1q0oa1
        complexed with dhy, of3
      4. 2167069Domain d1f1yb2: 1f1y B:148-359 [302401]
        automated match to d1q0oa2
        complexed with dhy, of3
    3. Domains for 1q0c:
      1. 2167058Domain d1q0ca1: 1q0c A:4-147 [88343]
        complexed with dhy, fe
      2. 2167059Domain d1q0ca2: 1q0c A:148-322 [88344]
        complexed with dhy, fe
      3. 2167060Domain d1q0cb1: 1q0c B:4-147 [88345]
        complexed with dhy, fe
      4. 2167061Domain d1q0cb2: 1q0c B:148-322 [88346]
        complexed with dhy, fe
      5. 2167062Domain d1q0cc1: 1q0c C:4-147 [88347]
        complexed with dhy, fe
      6. 2167063Domain d1q0cc2: 1q0c C:148-322 [88348]
        complexed with dhy, fe
      7. 2167064Domain d1q0cd1: 1q0c D:4-147 [88349]
        complexed with dhy, fe
      8. 2167065Domain d1q0cd2: 1q0c D:148-322 [88350]
        complexed with dhy, fe
    4. Domains for 1q0o:
      1. 2167070Domain d1q0oa1: 1q0o A:4-147 [88351]
        full length protein
        complexed with fe
      2. 2167071Domain d1q0oa2: 1q0o A:148-359 [88352]
        full length protein
        complexed with fe
      3. 2167072Domain d1q0ob1: 1q0o B:4-147 [88353]
        full length protein
        complexed with fe
      4. 2167073Domain d1q0ob2: 1q0o B:148-359 [88354]
        full length protein
        complexed with fe
    5. Domains for 2ig9:
      1. 2167034Domain d2ig9a1: 2ig9 A:4-147 [137352]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol
      2. 2167035Domain d2ig9a2: 2ig9 A:148-362 [137353]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol
      3. 2167036Domain d2ig9b1: 2ig9 B:4-147 [137354]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol
      4. 2167037Domain d2ig9b2: 2ig9 B:148-362 [137355]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol
      5. 2167038Domain d2ig9c1: 2ig9 C:4-147 [137356]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol
      6. 2167039Domain d2ig9c2: 2ig9 C:148-362 [137357]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol
      7. 2167040Domain d2ig9d1: 2ig9 D:4-147 [137358]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol
      8. 2167041Domain d2ig9d2: 2ig9 D:148-362 [137359]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol
    6. Domains for 2iga:
      1. 2167050Domain d2igaa1: 2iga A:4-147 [137360]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
      2. 2167051Domain d2igaa2: 2iga A:148-362 [137361]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
      3. 2167052Domain d2igab1: 2iga B:4-147 [137362]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
      4. 2167053Domain d2igab2: 2iga B:148-362 [137363]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
      5. 2167054Domain d2igac1: 2iga C:4-147 [137364]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
      6. 2167055Domain d2igac2: 2iga C:148-362 [137365]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
      7. 2167056Domain d2igad1: 2iga D:4-147 [137366]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
      8. 2167057Domain d2igad2: 2iga D:148-362 [137367]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, gol, oxy, xx2, xx3, xxp
    7. Domains for 3bza:
      1. 2167026Domain d3bzaa1: 3bza A:4-147 [155744]
        automated match to d1q0oa1
        complexed with ca, cl, gol, mn
      2. 2167027Domain d3bzaa2: 3bza A:148-362 [155745]
        automated match to d1q0oa2
        complexed with ca, cl, gol, mn
      3. 2167028Domain d3bzab1: 3bza B:4-147 [155746]
        automated match to d1q0oa1
        complexed with ca, cl, gol, mn
      4. 2167029Domain d3bzab2: 3bza B:148-362 [155747]
        automated match to d1q0oa2
        complexed with ca, cl, gol, mn
      5. 2167030Domain d3bzac1: 3bza C:4-147 [155748]
        automated match to d1q0oa1
        complexed with ca, cl, gol, mn
      6. 2167031Domain d3bzac2: 3bza C:148-362 [155749]
        automated match to d1q0oa2
        complexed with ca, cl, gol, mn
      7. 2167032Domain d3bzad1: 3bza D:4-147 [155750]
        automated match to d1q0oa1
        complexed with ca, cl, gol, mn
      8. 2167033Domain d3bzad2: 3bza D:148-362 [155751]
        automated match to d1q0oa2
        complexed with ca, cl, gol, mn
    8. Domains for 3ecj:
      1. 2167002Domain d3ecja1: 3ecj A:4-147 [158100]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol; mutant
      2. 2167003Domain d3ecja2: 3ecj A:148-322 [158101]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol; mutant
      3. 2167004Domain d3ecjb1: 3ecj B:4-147 [158102]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol; mutant
      4. 2167005Domain d3ecjb2: 3ecj B:148-322 [158103]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol; mutant
      5. 2167006Domain d3ecjc1: 3ecj C:4-147 [158104]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol; mutant
      6. 2167007Domain d3ecjc2: 3ecj C:148-322 [158105]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol; mutant
      7. 2167008Domain d3ecjd1: 3ecj D:4-147 [158106]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol; mutant
      8. 2167009Domain d3ecjd2: 3ecj D:148-322 [158107]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol; mutant
    9. Domains for 3eck:
      1. 2166986Domain d3ecka1: 3eck A:4-147 [158108]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol, xxg
      2. 2166987Domain d3ecka2: 3eck A:148-322 [158109]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol, xxg
      3. 2166988Domain d3eckb1: 3eck B:4-147 [158110]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol, xxg
      4. 2166989Domain d3eckb2: 3eck B:148-322 [158111]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol, xxg
      5. 2166990Domain d3eckc1: 3eck C:4-147 [158112]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol, xxg
      6. 2166991Domain d3eckc2: 3eck C:148-322 [158113]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol, xxg
      7. 2166992Domain d3eckd1: 3eck D:4-147 [158114]
        automatically matched to d1f1xa1
        complexed with ca, cl, fe2, gol, xxg
      8. 2166993Domain d3eckd2: 3eck D:148-322 [158115]
        automatically matched to d1f1xa2
        complexed with ca, cl, fe2, gol, xxg
    10. Domains for 3ojj:
      1. 2167010Domain d3ojja1: 3ojj A:4-147 [214362]
        automated match to d1q0oa1
        complexed with ca, cl, co, p6g, pg4
      2. 2167011Domain d3ojja2: 3ojj A:148-358 [214363]
        automated match to d1q0oa2
        complexed with ca, cl, co, p6g, pg4
      3. 2167012Domain d3ojjb1: 3ojj B:4-147 [214364]
        automated match to d1q0oa1
        complexed with ca, cl, co, p6g, pg4
      4. 2167013Domain d3ojjb2: 3ojj B:148-362 [214365]
        automated match to d1q0oa2
        complexed with ca, cl, co, p6g, pg4
      5. 2167014Domain d3ojjc1: 3ojj C:4-147 [214366]
        automated match to d1q0oa1
        complexed with ca, cl, co, p6g, pg4
      6. 2167015Domain d3ojjc2: 3ojj C:148-356 [214367]
        automated match to d1q0oa2
        complexed with ca, cl, co, p6g, pg4
      7. 2167016Domain d3ojjd1: 3ojj D:4-147 [214368]
        automated match to d1q0oa1
        complexed with ca, cl, co, p6g, pg4
      8. 2167017Domain d3ojjd2: 3ojj D:148-362 [214369]
        automated match to d1q0oa2
        complexed with ca, cl, co, p6g, pg4
    11. Domains for 3ojk:
      1. 2166994Domain d3ojka1: 3ojk A:4-147 [214370]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, co, p6g, pg4
      2. 2166995Domain d3ojka2: 3ojk A:148-358 [214371]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, co, p6g, pg4
      3. 2166996Domain d3ojkb1: 3ojk B:4-147 [214372]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, co, p6g, pg4
      4. 2166997Domain d3ojkb2: 3ojk B:148-362 [214373]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, co, p6g, pg4
      5. 2166998Domain d3ojkc1: 3ojk C:4-147 [214374]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, co, p6g, pg4
      6. 2166999Domain d3ojkc2: 3ojk C:148-354 [214375]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, co, p6g, pg4
      7. 2167000Domain d3ojkd1: 3ojk D:4-147 [214376]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, co, p6g, pg4
      8. 2167001Domain d3ojkd2: 3ojk D:148-362 [214377]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, co, p6g, pg4
    12. Domains for 3ojn:
      1. 2166970Domain d3ojna1: 3ojn A:4-147 [214381]
        automated match to d1q0oa1
        complexed with ca, cl, mn, p6g, pg4
      2. 2166971Domain d3ojna2: 3ojn A:148-358 [214382]
        automated match to d1q0oa2
        complexed with ca, cl, mn, p6g, pg4
      3. 2166972Domain d3ojnb1: 3ojn B:4-147 [214383]
        automated match to d1q0oa1
        complexed with ca, cl, mn, p6g, pg4
      4. 2166973Domain d3ojnb2: 3ojn B:148-362 [214384]
        automated match to d1q0oa2
        complexed with ca, cl, mn, p6g, pg4
      5. 2166974Domain d3ojnc1: 3ojn C:4-147 [214385]
        automated match to d1q0oa1
        complexed with ca, cl, mn, p6g, pg4
      6. 2166975Domain d3ojnc2: 3ojn C:148-357 [214386]
        automated match to d1q0oa2
        complexed with ca, cl, mn, p6g, pg4
      7. 2166976Domain d3ojnd1: 3ojn D:4-147 [214387]
        automated match to d1q0oa1
        complexed with ca, cl, mn, p6g, pg4
      8. 2166977Domain d3ojnd2: 3ojn D:148-362 [214388]
        automated match to d1q0oa2
        complexed with ca, cl, mn, p6g, pg4
    13. Domains for 3ojt:
      1. 2167018Domain d3ojta1: 3ojt A:4-147 [214389]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, p6g, pg4
      2. 2167019Domain d3ojta2: 3ojt A:148-358 [214390]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, p6g, pg4
      3. 2167020Domain d3ojtb1: 3ojt B:4-147 [214391]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, p6g, pg4
      4. 2167021Domain d3ojtb2: 3ojt B:148-362 [214392]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, p6g, pg4
      5. 2167022Domain d3ojtc1: 3ojt C:4-147 [214393]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, p6g, pg4
      6. 2167023Domain d3ojtc2: 3ojt C:148-357 [214394]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, p6g, pg4
      7. 2167024Domain d3ojtd1: 3ojt D:4-147 [214395]
        automated match to d1q0oa1
        complexed with ca, cl, fe2, p6g, pg4
      8. 2167025Domain d3ojtd2: 3ojt D:148-362 [214396]
        automated match to d1q0oa2
        complexed with ca, cl, fe2, p6g, pg4
    14. Domains for 4ghg:
      1. 2166954Domain d4ghga1: 4ghg A:3-147 [221899]
        automated match to d1q0oa1
        complexed with ca, cl, dhy, fe2, p6g, pg4
      2. 2166955Domain d4ghga2: 4ghg A:148-358 [221900]
        automated match to d1q0oa2
        complexed with ca, cl, dhy, fe2, p6g, pg4
      3. 2166956Domain d4ghgb1: 4ghg B:3-147 [221901]
        automated match to d1q0oa1
        complexed with ca, cl, dhy, fe2, p6g, pg4
      4. 2166957Domain d4ghgb2: 4ghg B:148-362 [221902]
        automated match to d1q0oa2
        complexed with ca, cl, dhy, fe2, p6g, pg4
      5. 2166958Domain d4ghgc1: 4ghg C:2-147 [221903]
        automated match to d1q0oa1
        complexed with ca, cl, dhy, fe2, p6g, pg4
      6. 2166959Domain d4ghgc2: 4ghg C:148-357 [221904]
        automated match to d1q0oa2
        complexed with ca, cl, dhy, fe2, p6g, pg4
      7. 2166960Domain d4ghgd1: 4ghg D:3-147 [221905]
        automated match to d1q0oa1
        complexed with ca, cl, dhy, fe2, p6g, pg4
      8. 2166961Domain d4ghgd2: 4ghg D:148-362 [221906]
        automated match to d1q0oa2
        complexed with ca, cl, dhy, fe2, p6g, pg4
    15. Domains for 4ghh:
      1. 2166962Domain d4ghha1: 4ghh A:3-147 [221907]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
      2. 2166963Domain d4ghha2: 4ghh A:148-358 [221908]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
      3. 2166964Domain d4ghhb1: 4ghh B:3-147 [221909]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
      4. 2166965Domain d4ghhb2: 4ghh B:148-362 [221910]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
      5. 2166966Domain d4ghhc1: 4ghh C:3-147 [221911]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
      6. 2166967Domain d4ghhc2: 4ghh C:148-357 [221912]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
      7. 2166968Domain d4ghhd1: 4ghh D:4-147 [221913]
        automated match to d1q0oa1
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
      8. 2166969Domain d4ghhd2: 4ghh D:148-362 [221914]
        automated match to d1q0oa2
        complexed with 4nc, ca, cl, fe2, p6g, peg, pg4
    16. Domains for 4z6z:
      1. 2167042Domain d4z6za1: 4z6z A:4-147 [276410]
        automated match to d1q0oa1
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
      2. 2167043Domain d4z6za2: 4z6z A:148-358 [276411]
        automated match to d1q0oa2
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
      3. 2167044Domain d4z6zb1: 4z6z B:4-147 [276408]
        automated match to d1q0oa1
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
      4. 2167045Domain d4z6zb2: 4z6z B:148-362 [276409]
        automated match to d1q0oa2
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
      5. 2167046Domain d4z6zc1: 4z6z C:4-147 [276412]
        automated match to d1q0oa1
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
      6. 2167047Domain d4z6zc2: 4z6z C:148-357 [276413]
        automated match to d1q0oa2
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
      7. 2167048Domain d4z6zd1: 4z6z D:4-147 [276414]
        automated match to d1q0oa1
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
      8. 2167049Domain d4z6zd2: 4z6z D:148-362 [276415]
        automated match to d1q0oa2
        complexed with 4sx, ca, cl, fe2, mpo, p6g, pg4
    17. Domains for 5trx:
      1. 2288798Domain d5trxa1: 5trx A:4-147 [332099]
        automated match to d1q0oa1
        complexed with ca, cl, fe2
      2. 2288799Domain d5trxa2: 5trx A:148-361 [332100]
        automated match to d1q0oa2
        complexed with ca, cl, fe2
      3. 2288917Domain d5trxc1: 5trx C:4-147 [332218]
        automated match to d1q0oa1
        complexed with ca, cl, fe2
      4. 2288918Domain d5trxc2: 5trx C:148-361 [332219]
        automated match to d1q0oa2
        complexed with ca, cl, fe2
      5. 2288987Domain d5trxb1: 5trx B:4-147 [332288]
        automated match to d1q0oa1
        complexed with ca, cl, fe2
      6. 2288988Domain d5trxb2: 5trx B:148-362 [332289]
        automated match to d1q0oa2
        complexed with ca, cl, fe2
      7. 2288999Domain d5trxd1: 5trx D:4-147 [332300]
        automated match to d1q0oa1
        complexed with ca, cl, fe2
      8. 2289000Domain d5trxd2: 5trx D:148-362 [332301]
        automated match to d1q0oa2
        complexed with ca, cl, fe2

More info for Protein Homoprotocatechuate 2,3-dioxygenase from d.32.1.3: Extradiol dioxygenases

Timeline for Protein Homoprotocatechuate 2,3-dioxygenase from d.32.1.3: Extradiol dioxygenases: