Lineage for Protein: Diaminopimelate decarboxylase LysA

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080829Superfamily c.1.6: PLP-binding barrel [51419] (2 families) (S)
    circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
  5. 2080830Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 protein domains)
  6. 2080865Protein Diaminopimelate decarboxylase LysA [89457] (3 species)
    most similar to eukaryotic ODC

Species:

  1. 2080866Escherichia coli [TaxId:562] [102048] (2 PDB entries)
    1. Domain for 1knw:
    2. Domain for 1ko0:
  2. 2080869Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
    Uniprot Q58497
    1. Domains for 1tuf:
      1. 2080874Domain d1tufa2: 1tuf A:50-313 [107336]
        Other proteins in same PDB: d1tufa1, d1tufb1
        Structural genomics target
        complexed with az1
      2. 2080875Domain d1tufb2: 1tuf B:50-313 [107338]
        Other proteins in same PDB: d1tufa1, d1tufb1
        Structural genomics target
        complexed with az1
    2. Domains for 1twi:
      1. 2080870Domain d1twia2: 1twi A:50-313 [107400]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
      2. 2080871Domain d1twib2: 1twi B:50-313 [107402]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
      3. 2080872Domain d1twic2: 1twi C:50-313 [107404]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
      4. 2080873Domain d1twid2: 1twi D:50-313 [107406]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
  3. 2080876Mycobacterium tuberculosis [TaxId:1773] [89458] (2 PDB entries)
    1. Domains for 1hkv:
      1. 2080877Domain d1hkva2: 1hkv A:46-310 [83560]
        Other proteins in same PDB: d1hkva1, d1hkvb1
        complexed with lys, plp
      2. 2080878Domain d1hkvb2: 1hkv B:46-310 [83562]
        Other proteins in same PDB: d1hkva1, d1hkvb1
        complexed with lys, plp
    2. Domains for 1hkw:
      1. 2080879Domain d1hkwa2: 1hkw A:46-310 [83564]
        Other proteins in same PDB: d1hkwa1, d1hkwb1
        complexed with so4
      2. 2080880Domain d1hkwb2: 1hkw B:46-310 [83566]
        Other proteins in same PDB: d1hkwa1, d1hkwb1
        complexed with so4

More info for Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain:

  • Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain first appeared in SCOP 1.65
  • Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.05