Lineage for Protein: Diaminopimelate decarboxylase LysA

  1. Root: SCOPe 2.08
  2. 2826024Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2826025Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2829052Superfamily c.1.6: PLP-binding barrel [51419] (2 families) (S)
    circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
  5. 2829053Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)
  6. 2829088Protein Diaminopimelate decarboxylase LysA [89457] (3 species)
    most similar to eukaryotic ODC

Species:

  1. 2829089Escherichia coli [TaxId:562] [102048] (2 PDB entries)
    1. Domain for 1knw:
    2. Domain for 1ko0:
  2. 2829092Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
    Uniprot Q58497
    1. Domains for 1tuf:
      1. 2829097Domain d1tufa2: 1tuf A:50-313 [107336]
        Other proteins in same PDB: d1tufa1, d1tufb1
        Structural genomics target
        complexed with az1
      2. 2829098Domain d1tufb2: 1tuf B:50-313 [107338]
        Other proteins in same PDB: d1tufa1, d1tufb1
        Structural genomics target
        complexed with az1
    2. Domains for 1twi:
      1. 2829093Domain d1twia2: 1twi A:50-313 [107400]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
      2. 2829094Domain d1twib2: 1twi B:50-313 [107402]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
      3. 2829095Domain d1twic2: 1twi C:50-313 [107404]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
      4. 2829096Domain d1twid2: 1twi D:50-313 [107406]
        Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
        Structural genomics target
        complexed with lys, mg, plp
  3. 2829099Mycobacterium tuberculosis [TaxId:1773] [89458] (2 PDB entries)
    1. Domains for 1hkv:
      1. 2829100Domain d1hkva2: 1hkv A:46-310 [83560]
        Other proteins in same PDB: d1hkva1, d1hkvb1
        complexed with lys, plp
      2. 2829101Domain d1hkvb2: 1hkv B:46-310 [83562]
        Other proteins in same PDB: d1hkva1, d1hkvb1
        complexed with lys, plp
    2. Domains for 1hkw:
      1. 2829102Domain d1hkwa2: 1hkw A:46-310 [83564]
        Other proteins in same PDB: d1hkwa1, d1hkwb1
        complexed with so4
      2. 2829103Domain d1hkwb2: 1hkw B:46-310 [83566]
        Other proteins in same PDB: d1hkwa1, d1hkwb1
        complexed with so4

More info for Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain:

  • Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain first appeared in SCOP 1.65
  • Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.07