SCOPe 2.08: Domain d1hkvb2: 1hkv B:46-310

Lineage for d1hkvb2 (1hkv B:46-310)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)

6. Protein Diaminopimelate decarboxylase LysA [89457] (3 species)
   most similar to eukaryotic ODC

7. Species Mycobacterium tuberculosis [TaxId:1773] [89458] (2 PDB entries)

8. Domain d1hkvb2: 1hkv B:46-310 [83562]
   Other proteins in same PDB: d1hkva1, d1hkvb1
   complexed with lys, plp

Details for d1hkvb2

PDB Entry: 1hkv, 2.6 Å

PDB Description: mycobacterium diaminopimelate dicarboxylase (lysa)

PDB Compounds: (B:) diaminopimelate decarboxylase

SCOPe Domain Sequences for d1hkvb2:

Sequence; same for both SEQRES and ATOM records:

>d1hkvb2 c.1.6.1 (B:46-310) Diaminopimelate decarboxylase LysA {Mycobacterium tuberculosis [TaxId: 1773]}
deddfrsrcretaaafgsganvhyaakaflcsevarwiseeglcldvctggelavalhas
fpperitlhgnnksvseltaavkagvghivvdsmteierldaiageagivqdvlvrltvg
veahthefistahedqkfglsvasgaamaavrrvfatdhlrlvglhshigsqifdvdgfe
laahrvigllrdvvgefgpektaqiatvdlggglgisylpsddpppiaelaaklgtivsd
estavglptpklvvepgraiagpgt

Timeline for d1hkvb2:

• d1hkvb2 first appeared in SCOP 1.65
  
• d1hkvb2 appears in SCOPe 2.07