PDB entry 1hkv

View 1hkv on RCSB PDB site
Description: mycobacterium diaminopimelate dicarboxylase (lysa)
Class: lyase
Keywords: lyase, decarboxylase, diaminopimelate, dapdc, plp, lysine pathway, mycbacterium tuberculosis, lysine synthetic pathway, pyridoxal phosphate, psi, protein structure initiative, tb structural genomics consortium, tb, tbsgc
Deposited on 2003-03-11, released 2003-03-20
The last revision prior to the SCOPe 2.08 freeze date was dated 2019-08-21, with a file datestamp of 2019-08-16.
Experiment type: XRAY
Resolution: 2.6 Å
R-factor: N/A
AEROSPACI score: 0.18 (click here for full SPACI score report)

Chains and heterogens:

  • Chain 'A':
    Compound: diaminopimelate decarboxylase
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Database cross-references and differences (RAF-indexed):
    • PDB 1HKV
    • Uniprot P31848 (1-446)
    Domains in SCOPe 2.08: d1hkva1, d1hkva2
  • Chain 'B':
    Compound: diaminopimelate decarboxylase
    Species: Mycobacterium tuberculosis [TaxId:83332]
    Database cross-references and differences (RAF-indexed):
    • PDB 1HKV
    • Uniprot P31848 (1-446)
    Domains in SCOPe 2.08: d1hkvb1, d1hkvb2
  • Heterogens: LYS, PLP, HOH

PDB Chain Sequences:

  • Chain 'A':
    Sequence, based on SEQRES records: (download) 
    >1hkvA (A:)
mnellhlapnvwprnttrdevgvvciagipltqlaqeygtplfvideddfrsrcretaaa
fgsganvhyaakaflcsevarwiseeglcldvctggelavalhasfpperitlhgnnksv
seltaavkagvghivvdsmteierldaiageagivqdvlvrltvgveahthefistahed
qkfglsvasgaamaavrrvfatdhlrlvglhshigsqifdvdgfelaahrvigllrdvvg
efgpektaqiatvdlggglgisylpsddpppiaelaaklgtivsdestavglptpklvve
pgraiagpgtitlyevgtvkdvdvsatahrryvsvdggmsdnirtalygaqydvrlvsrv
sdappvparlvgkhcesgdiivrdtwvpddirpgdlvavaatgaycyslssrynmvgrpa
vvavhagnarlvlrretvddllslevrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1hkvA (A:)
nellhlapnvwprnttrdevgvvciagipltqlaqeygtplfvideddfrsrcretaaaf
gsganvhyaakaflcsevarwiseeglcldvctggelavalhasfpperitlhgnnksvs
eltaavkagvghivvdsmteierldaiageagivqdvlvrltvgveahthefistahedq
kfglsvasgaamaavrrvfatdhlrlvglhshigsqifdvdgfelaahrvigllrdvvge
fgpektaqiatvdlggglgisylpsddpppiaelaaklgtivsdestavglptpklvvep
graiagpgtitlyevgtvkdvdvsatahrryvsvdggmsdnirtalygaqydvrlvsrvs
dappvparlvgkhcesgdiivrdtwvpddirpgdlvavaatgaycyslssrynmvgrpav
vavhagnarlvlrretvddllslevr

  • Chain 'B':
    Sequence, based on SEQRES records: (download) 
    >1hkvB (B:)
mnellhlapnvwprnttrdevgvvciagipltqlaqeygtplfvideddfrsrcretaaa
fgsganvhyaakaflcsevarwiseeglcldvctggelavalhasfpperitlhgnnksv
seltaavkagvghivvdsmteierldaiageagivqdvlvrltvgveahthefistahed
qkfglsvasgaamaavrrvfatdhlrlvglhshigsqifdvdgfelaahrvigllrdvvg
efgpektaqiatvdlggglgisylpsddpppiaelaaklgtivsdestavglptpklvve
pgraiagpgtitlyevgtvkdvdvsatahrryvsvdggmsdnirtalygaqydvrlvsrv
sdappvparlvgkhcesgdiivrdtwvpddirpgdlvavaatgaycyslssrynmvgrpa
vvavhagnarlvlrretvddllslevrhhhhhh

    Sequence, based on observed residues (ATOM records): (download) 
    >1hkvB (B:)
nellhlapnvwprnttrdevgvvciagipltqlaqeygtplfvideddfrsrcretaaaf
gsganvhyaakaflcsevarwiseeglcldvctggelavalhasfpperitlhgnnksvs
eltaavkagvghivvdsmteierldaiageagivqdvlvrltvgveahthefistahedq
kfglsvasgaamaavrrvfatdhlrlvglhshigsqifdvdgfelaahrvigllrdvvge
fgpektaqiatvdlggglgisylpsddpppiaelaaklgtivsdestavglptpklvvep
graiagpgtitlyevgtvkdvdvsatahrryvsvdggmsdnirtalygaqydvrlvsrvs
dappvparlvgkhcesgdiivrdtwvpddirpgdlvavaatgaycyslssrynmvgrpav
vavhagnarlvlrretvddllslevr