Lineage for Family c.1.6.1: Alanine racemase-like, N-terminal domain

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2078560Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2080829Superfamily c.1.6: PLP-binding barrel [51419] (2 families) (S)
    circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
  5. 2080830Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 protein domains)

Protein Domains:

  1. 2080831Alanine racemase [51421] (3 species)
    1. 2080832Species Bacillus stearothermophilus [TaxId:1422] [51422] (8 PDB entries)
    2. 2080849Species Pseudomonas aeruginosa [TaxId:287] [110345] (1 PDB entry)
      Uniprot Q9HTQ2
    3. 2080851Species Streptomyces lavendulae [TaxId:1914] [110346] (3 PDB entries)
      Uniprot Q65YW7
  2. 2080857D-serine dehydratase [310801] (2 species)
    1. 2080858Species Chicken (Gallus gallus) [TaxId:9031] [311066] (4 PDB entries)
    2. 2080863Species Idiomarina loihiensis [TaxId:283942] [311065] (1 PDB entry)
  3. 2080865Diaminopimelate decarboxylase LysA [89457] (3 species)
    most similar to eukaryotic ODC
    1. 2080866Species Escherichia coli [TaxId:562] [102048] (2 PDB entries)
    2. 2080869Species Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
      Uniprot Q58497
    3. 2080876Species Mycobacterium tuberculosis [TaxId:1773] [89458] (2 PDB entries)
  4. 2080881Eukaryotic ornithine decarboxylase [51423] (3 species)
    1. 2080882Species Human (Homo sapiens) [TaxId:9606] [51424] (1 PDB entry)
    2. 2080885Species Mouse (Mus musculus) [TaxId:10090] [51425] (1 PDB entry)
    3. 2080887Species Trypanosome (Trypanosoma brucei) [TaxId:5691] [51426] (5 PDB entries)
      Uniprot P07805

More info for Family c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Family c.1.6.1: Alanine racemase-like, N-terminal domain: