SCOPe 2.07: Protein: Diaminopimelate decarboxylase LysA

Lineage for Protein: Diaminopimelate decarboxylase LysA

Root: SCOPe 2.07
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand
Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)
Protein Diaminopimelate decarboxylase LysA [89457] (3 species)
most similar to eukaryotic ODC

Species:

Escherichia coli [TaxId:562] [102048] (2 PDB entries)
1. Domain for 1knw:
  - Domain d1knwa2: 1knw A:32-278 [90970]
    Other proteins in same PDB: d1knwa1, d1knwa3
    complexed with li, mes, plp, so4
2. Domain for 1ko0:
  - Domain d1ko0a2: 1ko0 A:32-278 [90972]
    Other proteins in same PDB: d1ko0a1
    complexed with lys, plp
Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
Uniprot Q58497
1. Domains for 1tuf:
  1. Domain d1tufa2: 1tuf A:50-313 [107336]
    Other proteins in same PDB: d1tufa1, d1tufb1
    Structural genomics target
    complexed with az1
  2. Domain d1tufb2: 1tuf B:50-313 [107338]
    Other proteins in same PDB: d1tufa1, d1tufb1
    Structural genomics target
    complexed with az1
2. Domains for 1twi:
  1. Domain d1twia2: 1twi A:50-313 [107400]
    Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
    Structural genomics target
    complexed with lys, mg, plp
  2. Domain d1twib2: 1twi B:50-313 [107402]
    Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
    Structural genomics target
    complexed with lys, mg, plp
  3. Domain d1twic2: 1twi C:50-313 [107404]
    Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
    Structural genomics target
    complexed with lys, mg, plp
  4. Domain d1twid2: 1twi D:50-313 [107406]
    Other proteins in same PDB: d1twia1, d1twib1, d1twic1, d1twid1
    Structural genomics target
    complexed with lys, mg, plp
Mycobacterium tuberculosis [TaxId:1773] [89458] (2 PDB entries)
1. Domains for 1hkv:
  1. Domain d1hkva2: 1hkv A:46-310 [83560]
    Other proteins in same PDB: d1hkva1, d1hkvb1
    complexed with lys, plp
  2. Domain d1hkvb2: 1hkv B:46-310 [83562]
    Other proteins in same PDB: d1hkva1, d1hkvb1
    complexed with lys, plp
2. Domains for 1hkw:
  1. Domain d1hkwa2: 1hkw A:46-310 [83564]
    Other proteins in same PDB: d1hkwa1, d1hkwb1
    complexed with so4
  2. Domain d1hkwb2: 1hkw B:46-310 [83566]
    Other proteins in same PDB: d1hkwa1, d1hkwb1
    complexed with so4

More info for Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain

Timeline for Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain:

Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain first appeared in SCOP 1.65
Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain appears in SCOPe 2.06
Protein Diaminopimelate decarboxylase LysA from c.1.6.1: Alanine racemase-like, N-terminal domain appears in the current release, SCOPe 2.08