SCOPe 2.08: Domain d1tufb2: 1tuf B:50-313

Lineage for d1tufb2 (1tuf B:50-313)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.6: PLP-binding barrel [51419] (2 families)
   circular permutation of the canonical fold: begins with an alpha helix and ends with a beta-strand

5. Family c.1.6.1: Alanine racemase-like, N-terminal domain [51420] (4 proteins)

6. Protein Diaminopimelate decarboxylase LysA [89457] (3 species)
   most similar to eukaryotic ODC

7. Species Methanococcus jannaschii [TaxId:2190] [110347] (2 PDB entries)
   Uniprot Q58497

8. Domain d1tufb2: 1tuf B:50-313 [107338]
   Other proteins in same PDB: d1tufa1, d1tufb1
   Structural genomics target
   complexed with az1

Details for d1tufb2

PDB Entry: 1tuf, 2.4 Å

PDB Description: crystal structure of diaminopimelate decarboxylase from m. jannaschi

PDB Compounds: (B:) diaminopimelate decarboxylase

SCOPe Domain Sequences for d1tufb2:

Sequence; same for both SEQRES and ATOM records:

>d1tufb2 c.1.6.1 (B:50-313) Diaminopimelate decarboxylase LysA {Methanococcus jannaschii [TaxId: 2190]}
seeqikinynryieafkrweeetgkefivayaykananlaitrllaklgcgadvvsggel
yiaklsnvpskkivfngncktkeeiimgieanirafnvdsiselilinetakelgetanv
afrinpnvnpkthpkistglkknkfgldvesgiamkaikmalemeyvnvvgvhchigsql
tdispfieetrkvmdfvvelkeegieiedvnlggglgipyykdkqiptqkdladaiintm
lkykdkvempnlilepgrslvata

Timeline for d1tufb2:

• d1tufb2 first appeared in SCOP 1.69
  
• d1tufb2 appears in SCOPe 2.07