SCOPe 2.08: Protein: beta-Amylase

Lineage for Protein: beta-Amylase

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
the first seven superfamilies have similar phosphate-binding sites

Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
members of the family may contain various insert subdomains
in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

Protein beta-Amylase [51481] (3 species)
Common fold covers whole protein structure

Species:

Barley (Hordeum vulgare) [TaxId:4513] [51483] (1 PDB entry)
- Domain for 1b1y:
  - Domain d1b1ya_: 1b1y A: [28796]
    complexed with bgc; mutant
    has additional insertions and/or extensions that are not grouped together
Soybean (Glycine max) [TaxId:3847] [51482] (18 PDB entries)
Uniprot P10538
1. Domain for 1bfn:
  - Domain d1bfna_: 1bfn A: [28792]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
2. Domain for 1btc:
  - Domain d1btca_: 1btc A: [28791]
    complexed with bme, so4
    has additional insertions and/or extensions that are not grouped together
3. Domain for 1bya:
  - Domain d1byaa_: 1bya A: [28795]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
4. Domain for 1byb:
  - Domain d1byba_: 1byb A: [28790]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
5. Domain for 1byc:
  - Domain d1byca_: 1byc A: [28793]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
6. Domain for 1byd:
  - Domain d1byda_: 1byd A: [28794]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
7. Domain for 1q6c:
  - Domain d1q6ca_: 1q6c A: [95970]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
8. Domain for 1q6d:
  - Domain d1q6da_: 1q6d A: [95971]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
9. Domain for 1q6e:
  - Domain d1q6ea_: 1q6e A: [95972]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
10. Domain for 1q6f:
  - Domain d1q6fa_: 1q6f A: [95973]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
11. Domain for 1q6g:
  - Domain d1q6ga_: 1q6g A: [95974]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
12. Domains for 1uko:
  1. Domain d1ukoa_: 1uko A: [99501]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
  2. Domain d1ukob_: 1uko B: [99502]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
  3. Domain d1ukoc_: 1uko C: [99503]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
  4. Domain d1ukod_: 1uko D: [99504]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
13. Domains for 1ukp:
  1. Domain d1ukpa_: 1ukp A: [99505]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
  2. Domain d1ukpb_: 1ukp B: [99506]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
  3. Domain d1ukpc_: 1ukp C: [99507]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
  4. Domain d1ukpd_: 1ukp D: [99508]
    complexed with so4; mutant
    has additional insertions and/or extensions that are not grouped together
14. Domain for 1v3h:
  - Domain d1v3ha_: 1v3h A: [108303]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
15. Domain for 1v3i:
  - Domain d1v3ia_: 1v3i A: [108304]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
16. Domain for 1wdq:
  - Domain d1wdqa1: 1wdq A:5-495 [120908]
    complexed with so4
    has additional insertions and/or extensions that are not grouped together
17. Domain for 1wdr:
  - Domain d1wdra1: 1wdr A:5-495 [120909]
    complexed with glc, so4
    has additional insertions and/or extensions that are not grouped together
18. Domain for 1wds:
  - Domain d1wdsa1: 1wds A:5-495 [120910]
    complexed with glc, so4
    has additional insertions and/or extensions that are not grouped together
Sweet potato (Ipomoea batatas) [TaxId:4120] [51484] (3 PDB entries)
1. Domain for 1fa2:
  - Domain d1fa2a_: 1fa2 A: [28797]
    complexed with dtt
    has additional insertions and/or extensions that are not grouped together
2. Domain for 5wqs:
  - Domain d5wqsa_: 5wqs A: [342508]
    automated match to d1fa2a_
    complexed with ipa
    has additional insertions and/or extensions that are not grouped together
3. Domain for 5wqu:
  - Domain d5wqua_: 5wqu A: [342556]
    automated match to d1fa2a_
    has additional insertions and/or extensions that are not grouped together

More info for Protein beta-Amylase from c.1.8.1: Amylase, catalytic domain

Timeline for Protein beta-Amylase from c.1.8.1: Amylase, catalytic domain:

Protein beta-Amylase from c.1.8.1: Amylase, catalytic domain first appeared (with stable ids) in SCOP 1.55, called Protein beta-Amylase from c.1.8.2: beta-Amylase
Protein beta-Amylase from c.1.8.1: Amylase, catalytic domain appears in SCOPe 2.07