Lineage for d1byda_ (1byd A:)

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2413227Fold c.1: TIM beta/alpha-barrel [51350] (33 superfamilies)
    contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
    the first seven superfamilies have similar phosphate-binding sites
  4. 2416558Superfamily c.1.8: (Trans)glycosidases [51445] (15 families) (S)
  5. 2416559Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
    members of the family may contain various insert subdomains
    in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain
  6. 2416756Protein beta-Amylase [51481] (3 species)
    Common fold covers whole protein structure
  7. 2416759Species Soybean (Glycine max) [TaxId:3847] [51482] (18 PDB entries)
    Uniprot P10538
  8. 2416775Domain d1byda_: 1byd A: [28794]
    complexed with dom, so4

Details for d1byda_

PDB Entry: 1byd (more details), 2.2 Å

PDB Description: crystal structures of soybean beta-amylase reacted with beta-maltose and maltal: active site components and their apparent role in catalysis
PDB Compounds: (A:) beta-amylase

SCOPe Domain Sequences for d1byda_:

Sequence; same for both SEQRES and ATOM records: (download)

>d1byda_ c.1.8.1 (A:) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]}
snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgp
kqydwrayrslfqlvqecgltlqaimsfhqcggnvgdivnipipqwvldigesnhdifyt
nrsgtrnkeyltvgvdnepifhgrtaieiysdymksfrenmsdflesgliidievglgpa
gelrypsypqsqgwefprigefqcydkylkadfkaavaraghpewelpddagkyndvpes
tgffksngtyvtekgkffltwysnkllnhgdqildeankaflgckvklaikvsgihwwyk
venhaaeltagyynlndrdgyrpiarmlsrhhailnftclemrdseqpsdaksgpqelvq
qvlsggwredirvagenalprydataynqiilnakpqgvnnngppklsmfgvtylrlsdd
llqksnfnifkkfvlkmhadqdycanpqkynhaitplkpsapkipievlleatkptlpfp
wlpetdmkvdg

SCOPe Domain Coordinates for d1byda_:

Click to download the PDB-style file with coordinates for d1byda_.
(The format of our PDB-style files is described here.)

Timeline for d1byda_: