SCOPe 2.08: Domain d5wqsa_: 5wqs A:

Lineage for d5wqsa_ (5wqs A:)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein beta-Amylase [51481] (3 species)
   Common fold covers whole protein structure

7. Species Sweet potato (Ipomoea batatas) [TaxId:4120] [51484] (3 PDB entries)

8. Domain d5wqsa_: 5wqs A: [342508]
   automated match to d1fa2a_
   complexed with ipa
   has additional insertions and/or extensions that are not grouped together

Details for d5wqsa_

PDB Entry: 5wqs, 1.9 Å

PDB Description: crystal structure of apo beta-amylase from sweet potato

PDB Compounds: (A:) beta-amylase

SCOPe Domain Sequences for d5wqsa_:

Sequence, based on SEQRES records:

>d5wqsa_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]}
apipgvmpignyvslyvmlplgvvnadnvfpdkekvedelkqvkaggcdgvmvdvwwgii
eakgpkqydwsayrelfqlvkkcglkiqaimsfhqcggnvgdavfipipqwilqigdknp
difytnragnrnqeylslgvdnqrlfqgrtalemyrdfmesfrdnmadflkagdivdiev
gcgaagelrypsypetqgwvfpgigefqcydkymvadwkeavkqagnadwempgkgagty
ndtpdkteffrpngtyktdmgkffltwysnkliihgdqvleeankvfvglrvniaakvsg
ihwwynhvshaaeltagfynvagrdgyrpiarmlarhhatlnftclemrdseqpaeaksa
pqelvqqvlssgwkeyidvagenalprydataynqmlllvrpngvnlngppklkmsglty
lrlsddllqtdnfelfkkfvkkmhadldpspnaispavlersnsaitidelmeatkgsrp
fpwydvtdmpvdgsnpfd

Sequence, based on observed residues (ATOM records):

>d5wqsa_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]}
apipgvmpignyvslyvmlplgvvnadnvfpdkekvedelkqvkaggcdgvmvdvwwgii
eakgpkqydwsayrelfqlvkkcglkiqaimsfhqcggnvgdavfipipqwilqigdknp
difytnragnrnqeylslgvdnqrlfqgrtalemyrdfmesfrdnmadflkagdivdiev
gcgaagelrypsypetqgwvfpgigefqcydkymvadwkeavkqagnadwempgkgagty
ndtpdkteffrpngtyktdmgkffltwysnkliihgdqvleeankvfvglrvniaakvsg
ihwwynhvshaaeltagfynvagrdgyrpiarmlarhhatlnftclemrdseqpaeaksa
pqelvqqvlssgwkeyidvagenalprydataynqmlllvrpngvnlngppklkmsglty
lrlsddllqtdnfelfkkfvkkmhadldpspispavlersnsaitidelmeatkgsrpfp
wydvtdmpvdgsnpfd

Timeline for d5wqsa_:

• d5wqsa_ first appeared in SCOPe 2.06
  
• d5wqsa_ appears in SCOPe 2.07