SCOPe 2.08: Domain d1wdqa1: 1wdq A:5-495

Lineage for d1wdqa1 (1wdq A:5-495)

1. Root: SCOPe 2.08

2. Class c: Alpha and beta proteins (a/b) [51349] (148 folds)

3. Fold c.1: TIM beta/alpha-barrel [51350] (34 superfamilies)
   contains parallel beta-sheet barrel, closed; n=8, S=8; strand order 12345678
   the first seven superfamilies have similar phosphate-binding sites

4. Superfamily c.1.8: (Trans)glycosidases [51445] (15 families)

5. Family c.1.8.1: Amylase, catalytic domain [51446] (26 proteins)
   members of the family may contain various insert subdomains
   in alpha-amylases and closer relatives this domain is usually followed by a common all-beta domain

6. Protein beta-Amylase [51481] (3 species)
   Common fold covers whole protein structure

7. Species Soybean (Glycine max) [TaxId:3847] [51482] (18 PDB entries)
   Uniprot P10538

8. Domain d1wdqa1: 1wdq A:5-495 [120908]
   complexed with so4
   has additional insertions and/or extensions that are not grouped together

Details for d1wdqa1

PDB Entry: 1wdq, 1.28 Å

PDB Description: the role of an inner loop in the catalytic mechanism of soybean beta- amylase

PDB Compounds: (A:) beta-amylase

SCOPe Domain Sequences for d1wdqa1:

Sequence; same for both SEQRES and ATOM records:

>d1wdqa1 c.1.8.1 (A:5-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]}
snmllnyvpvyvmlplgvvnvdnvfedpdglkeqllqlraagvdgvmvdvwwgiielkgp
kqydwrayrsllqlvqecgltlqaimsfhqcggnvgdivnipipqwvldigesnhdifyt
nrsgtrnkeyltvgvdnepifhgrtaieiysdymksfrenmsdflesgliidievglgpa
gelrypsypqsqgwefpgigefqcydkylkadfkaavaraghpewelpddagkyndvpes
tgffksngtyvtekgkffltwysnkllnhgdqildeankaflgckvklaikvsgihwwyk
venhaaeltagyynlndrdgyrpiarmlsrhhailnfvclemrdseqpsdaksgpqelvq
qvlsggwredirvagenalprydataynqiilnarpqgvnnngppklsmfgvtylrlsdd
llqksnfnifkkfvlkmhadqdycanpqkynhaitplkpsapkipievlleatkptlpfp
wlpetdmkvdg

Timeline for d1wdqa1:

• d1wdqa1 first appeared in SCOP 1.73
  
• d1wdqa1 appears in SCOPe 2.07