Lineage for Protein: ssDNA-binding protein

  1. Root: SCOPe 2.08
  2. 2739516Class b: All beta proteins [48724] (180 folds)
  3. 2787872Fold b.40: OB-fold [50198] (17 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 2789270Superfamily b.40.4: Nucleic acid-binding proteins [50249] (18 families) (S)
  5. 2789342Family b.40.4.3: Single strand DNA-binding domain, SSB [50263] (14 proteins)
    barrel, closed; n=5, S=10
  6. 2789438Protein ssDNA-binding protein [50264] (4 species)

Species:

  1. 2789439Deinococcus radiodurans [TaxId:1299] [110194] (1 PDB entry)
    Uniprot Q9RY51
    • Domain for 1se8:
      • 2789440Domain d1se8a_: 1se8 A: [105448]
        multiple common domains: applies to families that are inconsistently divided into domains
  2. 2789441Escherichia coli [TaxId:562] [50266] (6 PDB entries)
    Uniprot P02339
    1. Domains for 1eqq:
      1. 2789462Domain d1eqqa_: 1eqq A: [90461]
        complexed with ssDNA
        protein/DNA complex; protein/RNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789463Domain d1eqqb_: 1eqq B: [90462]
        complexed with ssDNA
        protein/DNA complex; protein/RNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789464Domain d1eqqc_: 1eqq C: [90463]
        complexed with ssDNA
        protein/DNA complex; protein/RNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789465Domain d1eqqd_: 1eqq D: [90464]
        complexed with ssDNA
        protein/DNA complex; protein/RNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    2. Domains for 1eyg:
      1. 2789454Domain d1eyga_: 1eyg A: [25292]
        protein/DNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789455Domain d1eygb_: 1eyg B: [25293]
        protein/DNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789456Domain d1eygc_: 1eyg C: [25294]
        protein/DNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789457Domain d1eygd_: 1eyg D: [25295]
        protein/DNA complex
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    3. Domains for 1kaw:
      1. 2789450Domain d1kawa_: 1kaw A: [25288]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789451Domain d1kawb_: 1kaw B: [25289]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789452Domain d1kawc_: 1kaw C: [25290]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789453Domain d1kawd_: 1kaw D: [25291]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    4. Domains for 1qvc:
      1. 2789442Domain d1qvca_: 1qvc A: [25284]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789443Domain d1qvcb_: 1qvc B: [25285]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789444Domain d1qvcc_: 1qvc C: [25286]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789445Domain d1qvcd_: 1qvc D: [25287]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    5. Domains for 1sru:
      1. 2789458Domain d1srua_: 1sru A: [105971]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789459Domain d1srub_: 1sru B: [105972]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789460Domain d1sruc_: 1sru C: [105973]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789461Domain d1srud_: 1sru D: [105974]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    6. Domains for 4mz9:
      1. 2789446Domain d4mz9a_: 4mz9 A: [229921]
        automated match to d1eqqa_
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789447Domain d4mz9b_: 4mz9 B: [229922]
        automated match to d1eqqa_
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789448Domain d4mz9c_: 4mz9 C: [229924]
        automated match to d1eqqa_
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789449Domain d4mz9d_: 4mz9 D: [229923]
        automated match to d1eqqa_
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
  3. 2789466Human (Homo sapiens), mitochondria [TaxId:9606] [50265] (2 PDB entries)
    Uniprot Q04837
    1. Domains for 1s3o:
      1. 2789469Domain d1s3oa_: 1s3o A: [105247]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789470Domain d1s3ob_: 1s3o B: [105248]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    2. Domains for 3ull:
      1. 2789467Domain d3ulla_: 3ull A: [25282]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789468Domain d3ullb_: 3ull B: [25283]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
  4. 2789471Mycobacterium tuberculosis [TaxId:1773] [101760] (4 PDB entries)
    1. Domains for 1ue1:
      1. 2789472Domain d1ue1a_: 1ue1 A: [99243]
        complexed with zn
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789473Domain d1ue1b_: 1ue1 B: [99244]
        complexed with zn
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    2. Domains for 1ue5:
      1. 2789474Domain d1ue5a_: 1ue5 A: [99245]
        complexed with cd
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789475Domain d1ue5b_: 1ue5 B: [99246]
        complexed with cd
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    3. Domains for 1ue6:
      1. 2789476Domain d1ue6a_: 1ue6 A: [99247]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789477Domain d1ue6b_: 1ue6 B: [99248]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789478Domain d1ue6c_: 1ue6 C: [99249]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789479Domain d1ue6d_: 1ue6 D: [99250]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
    4. Domains for 1ue7:
      1. 2789480Domain d1ue7a_: 1ue7 A: [99251]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      2. 2789481Domain d1ue7b_: 1ue7 B: [99252]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      3. 2789482Domain d1ue7c_: 1ue7 C: [99253]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain
      4. 2789483Domain d1ue7d_: 1ue7 D: [99254]
        has additional insertions and/or extensions that are not grouped together
        missing some secondary structures that made up less than one-third of the common domain

More info for Protein ssDNA-binding protein from b.40.4.3: Single strand DNA-binding domain, SSB

Timeline for Protein ssDNA-binding protein from b.40.4.3: Single strand DNA-binding domain, SSB: