Lineage for Superfamily b.40.4: Nucleic acid-binding proteins

  1. Root: SCOPe 2.07
  2. 2344607Class b: All beta proteins [48724] (178 folds)
  3. 2381452Fold b.40: OB-fold [50198] (17 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 2382744Superfamily b.40.4: Nucleic acid-binding proteins [50249] (18 families) (S)

Families:

  1. 2382745b.40.4.1: Anticodon-binding domain [50250] (2 protein domains)
    barrel, closed; n=5, S=10
  2. 2382792b.40.4.2: DNA helicase RuvA subunit, N-terminal domain [50259] (1 protein)
    barrel, closed; n=5, S=10
    automatically mapped to Pfam PF01330
  3. 2382816b.40.4.3: Single strand DNA-binding domain, SSB [50263] (13 protein domains)
    barrel, closed; n=5, S=10
  4. 2383083b.40.4.4: Myf domain [50277] (7 protein domains)
  5. 2383132b.40.4.5: Cold shock DNA-binding domain-like [50282] (32 protein domains)
    barrel, closed; n=5, S=8
  6. 2383641b.40.4.6: DNA ligase/mRNA capping enzyme postcatalytic domain [50307] (5 protein domains)
  7. 2383674b.40.4.7: Phage ssDNA-binding proteins [50315] (4 protein domains)
    barrel, open; n*=5, S*=8; the members' structures vary greater that those from cellular organisms
  8. 2383715b.40.4.8: RNA polymerase subunit RBP8 [50321] (1 protein)
    duplication; contains tandem repeat of two incomplete OB-folds; forms a single barrel; n=8, S=10
    automatically mapped to Pfam PF03870
  9. 2383759b.40.4.9: RecG "wedge" domain [69259] (1 protein)
  10. 2383763b.40.4.10: Hypothetical protein MTH1 (MT0001), insert domain [74955] (1 protein)
  11. 2383768b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain [89332] (1 protein)
  12. 2383777b.40.4.12: TRAM domain [101768] (3 protein domains)
    Pfam PF01938
  13. 2383789b.40.4.13: RecO N-terminal domain-like [117204] (1 protein)
    N-terminal part of Pfam PF02565
  14. 2383796b.40.4.14: TIP49 domain [141315] (1 protein)
    N-terminal part of Pfam PF06068; the RuvA-like OB-fold domain in RuvB-like eukaryotic proteins
  15. 2383800b.40.4.15: SSO2064-like [159109] (1 protein)
    Pfam PF01796; DUF35; contains extra N-terminal zinc finger subdomain of the rubredoxin-like fold
  16. 2383807b.40.4.16: RNB domain-like [159112] (3 protein domains)
    Pfam PF00773; RNase II catalytic domain; decorated OB-fold domain with extra C-terminal structures forming the active site
  17. 2383825b.40.4.17: RNA Helicase C-terminal domain-like [345961] (1 protein)
    Pfam PF07717; contains additional helices
  18. 2383832b.40.4.0: automated matches [191416] (1 protein)
    not a true family

More info for Superfamily b.40.4: Nucleic acid-binding proteins

Timeline for Superfamily b.40.4: Nucleic acid-binding proteins: