Lineage for Superfamily b.40.4: Nucleic acid-binding proteins

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2049950Fold b.40: OB-fold [50198] (16 superfamilies)
    barrel, closed or partly opened n=5, S=10 or S=8; greek-key
  4. 2051128Superfamily b.40.4: Nucleic acid-binding proteins [50249] (17 families) (S)

Families:

  1. 2051129b.40.4.1: Anticodon-binding domain [50250] (2 protein domains)
    barrel, closed; n=5, S=10
  2. 2051176b.40.4.2: DNA helicase RuvA subunit, N-terminal domain [50259] (1 protein)
    barrel, closed; n=5, S=10
    automatically mapped to Pfam PF01330
  3. 2051200b.40.4.3: Single strand DNA-binding domain, SSB [50263] (13 protein domains)
    barrel, closed; n=5, S=10
  4. 2051462b.40.4.4: Myf domain [50277] (7 protein domains)
  5. 2051511b.40.4.5: Cold shock DNA-binding domain-like [50282] (31 protein domains)
    barrel, closed; n=5, S=8
  6. 2052008b.40.4.6: DNA ligase/mRNA capping enzyme postcatalytic domain [50307] (5 protein domains)
  7. 2052041b.40.4.7: Phage ssDNA-binding proteins [50315] (4 protein domains)
    barrel, open; n*=5, S*=8; the members' structures vary greater that those from cellular organisms
  8. 2052082b.40.4.8: RNA polymerase subunit RBP8 [50321] (1 protein)
    duplication; contains tandem repeat of two incomplete OB-folds; forms a single barrel; n=8, S=10
    automatically mapped to Pfam PF03870
  9. 2052125b.40.4.9: RecG "wedge" domain [69259] (1 protein)
  10. 2052129b.40.4.10: Hypothetical protein MTH1 (MT0001), insert domain [74955] (1 protein)
  11. 2052134b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain [89332] (1 protein)
  12. 2052143b.40.4.12: TRAM domain [101768] (3 protein domains)
    Pfam PF01938
  13. 2052155b.40.4.13: RecO N-terminal domain-like [117204] (1 protein)
    N-terminal part of Pfam PF02565
  14. 2052162b.40.4.14: TIP49 domain [141315] (1 protein)
    N-terminal part of Pfam PF06068; the RuvA-like OB-fold domain in RuvB-like eukaryotic proteins
  15. 2052166b.40.4.15: SSO2064-like [159109] (1 protein)
    Pfam PF01796; DUF35; contains extra N-terminal zinc finger subdomain of the rubredoxin-like fold
  16. 2052173b.40.4.16: RNB domain-like [159112] (3 protein domains)
    Pfam PF00773; RNase II catalytic domain; decorated OB-fold domain with extra C-terminal structures forming the active site
  17. 2052191b.40.4.0: automated matches [191416] (1 protein)
    not a true family

More info for Superfamily b.40.4: Nucleic acid-binding proteins

Timeline for Superfamily b.40.4: Nucleic acid-binding proteins: