Lineage for Protein: Histone H3

  1. Root: SCOPe 2.01
  2. 901761Class a: All alpha proteins [46456] (284 folds)
  3. 909266Fold a.22: Histone-fold [47112] (1 superfamily)
    core: 3 helices; long middle helix is flanked at each end with shorter ones
  4. 909267Superfamily a.22.1: Histone-fold [47113] (4 families) (S)
  5. 909268Family a.22.1.1: Nucleosome core histones [47114] (6 proteins)
    form octamers composed of two copies of each of the four histones
  6. 909423Protein Histone H3 [47122] (5 species)

Species:

  1. 909424African clawed frog (Xenopus laevis) [TaxId:8355] [47124] (38 PDB entries)
    1. Domains for 1aoi:
      1. 909473Domain d1aoia_: 1aoi A: [16462]
        Other proteins in same PDB: d1aoib_, d1aoic_, d1aoid_, d1aoif_, d1aoig_, d1aoih_
        protein/DNA complex; complexed with mn
      2. 909474Domain d1aoie_: 1aoi E: [16463]
        Other proteins in same PDB: d1aoib_, d1aoic_, d1aoid_, d1aoif_, d1aoig_, d1aoih_
        protein/DNA complex; complexed with mn
    2. Domains for 1f66:
      1. 909443Domain d1f66a_: 1f66 A: [16460]
        Other proteins in same PDB: d1f66b_, d1f66c_, d1f66d_, d1f66f_, d1f66g_, d1f66h_
        protein/DNA complex; complexed with mn
      2. 909444Domain d1f66e_: 1f66 E: [16461]
        Other proteins in same PDB: d1f66b_, d1f66c_, d1f66d_, d1f66f_, d1f66g_, d1f66h_
        protein/DNA complex; complexed with mn
    3. Domains for 1kx3:
      1. 909429Domain d1kx3a_: 1kx3 A: [77577]
        Other proteins in same PDB: d1kx3b_, d1kx3c_, d1kx3d_, d1kx3f_, d1kx3g_, d1kx3h_
        protein/DNA complex; complexed with mn
      2. 909430Domain d1kx3e_: 1kx3 E: [77581]
        Other proteins in same PDB: d1kx3b_, d1kx3c_, d1kx3d_, d1kx3f_, d1kx3g_, d1kx3h_
        protein/DNA complex; complexed with mn
    4. Domains for 1kx4:
      1. 909465Domain d1kx4a_: 1kx4 A: [77585]
        Other proteins in same PDB: d1kx4b_, d1kx4c_, d1kx4d_, d1kx4f_, d1kx4g_, d1kx4h_
        protein/DNA complex; complexed with cl, mn
      2. 909466Domain d1kx4e_: 1kx4 E: [77589]
        Other proteins in same PDB: d1kx4b_, d1kx4c_, d1kx4d_, d1kx4f_, d1kx4g_, d1kx4h_
        protein/DNA complex; complexed with cl, mn
    5. Domains for 1kx5:
      1. 909425Domain d1kx5a_: 1kx5 A: [77593]
        Other proteins in same PDB: d1kx5b_, d1kx5c_, d1kx5d_, d1kx5f_, d1kx5g_, d1kx5h_
        protein/DNA complex; complexed with cl, mn
      2. 909426Domain d1kx5e_: 1kx5 E: [77597]
        Other proteins in same PDB: d1kx5b_, d1kx5c_, d1kx5d_, d1kx5f_, d1kx5g_, d1kx5h_
        protein/DNA complex; complexed with cl, mn
    6. Domains for 1m18:
      1. 909439Domain d1m18a_: 1m18 A: [78371]
        Other proteins in same PDB: d1m18b_, d1m18c_, d1m18d_, d1m18f_, d1m18g_, d1m18h_
        protein/DNA complex; complexed with abu, imt, mn
      2. 909440Domain d1m18e_: 1m18 E: [78375]
        Other proteins in same PDB: d1m18b_, d1m18c_, d1m18d_, d1m18f_, d1m18g_, d1m18h_
        protein/DNA complex; complexed with abu, imt, mn
    7. Domains for 1m19:
      1. 909433Domain d1m19a_: 1m19 A: [78379]
        Other proteins in same PDB: d1m19b_, d1m19c_, d1m19d_, d1m19f_, d1m19g_, d1m19h_
        protein/DNA complex; complexed with imt, mn
      2. 909434Domain d1m19e_: 1m19 E: [78383]
        Other proteins in same PDB: d1m19b_, d1m19c_, d1m19d_, d1m19f_, d1m19g_, d1m19h_
        protein/DNA complex; complexed with imt, mn
    8. Domains for 1m1a:
      1. 909461Domain d1m1aa_: 1m1a A: [78387]
        Other proteins in same PDB: d1m1ab_, d1m1ac_, d1m1ad_, d1m1af_, d1m1ag_, d1m1ah_
        protein/DNA complex; complexed with imt, mn
      2. 909462Domain d1m1ae_: 1m1a E: [78391]
        Other proteins in same PDB: d1m1ab_, d1m1ac_, d1m1ad_, d1m1af_, d1m1ag_, d1m1ah_
        protein/DNA complex; complexed with imt, mn
    9. Domains for 1p34:
      1. 909459Domain d1p34a_: 1p34 A: [93970]
        Other proteins in same PDB: d1p34b_, d1p34c_, d1p34d_, d1p34f_, d1p34g_, d1p34h_
        protein/DNA complex; mutant
      2. 909460Domain d1p34e_: 1p34 E: [93974]
        Other proteins in same PDB: d1p34b_, d1p34c_, d1p34d_, d1p34f_, d1p34g_, d1p34h_
        protein/DNA complex; mutant
    10. Domains for 1p3a:
      1. 909476Domain d1p3aa_: 1p3a A: [93980]
        Other proteins in same PDB: d1p3ab_, d1p3ac_, d1p3ad_, d1p3af_, d1p3ag_, d1p3ah_
        protein/DNA complex; mutant
      2. 909477Domain d1p3ae_: 1p3a E: [93984]
        Other proteins in same PDB: d1p3ab_, d1p3ac_, d1p3ad_, d1p3af_, d1p3ag_, d1p3ah_
        protein/DNA complex; mutant
    11. Domains for 1p3b:
      1. 909486Domain d1p3ba_: 1p3b A: [93988]
        Other proteins in same PDB: d1p3bb_, d1p3bc_, d1p3bd_, d1p3bf_, d1p3bg_, d1p3bh_
        protein/DNA complex; mutant
      2. 909487Domain d1p3be_: 1p3b E: [93992]
        Other proteins in same PDB: d1p3bb_, d1p3bc_, d1p3bd_, d1p3bf_, d1p3bg_, d1p3bh_
        protein/DNA complex; mutant
    12. Domains for 1p3f:
      1. 909480Domain d1p3fa_: 1p3f A: [93998]
        Other proteins in same PDB: d1p3fb_, d1p3fc_, d1p3fd_, d1p3ff_, d1p3fg_, d1p3fh_
        protein/DNA complex; mutant
      2. 909481Domain d1p3fe_: 1p3f E: [94002]
        Other proteins in same PDB: d1p3fb_, d1p3fc_, d1p3fd_, d1p3ff_, d1p3fg_, d1p3fh_
        protein/DNA complex; mutant
    13. Domains for 1p3g:
      1. 909457Domain d1p3ga_: 1p3g A: [94006]
        Other proteins in same PDB: d1p3gb_, d1p3gc_, d1p3gd_, d1p3gf_, d1p3gg_, d1p3gh_
        protein/DNA complex; mutant
      2. 909458Domain d1p3ge_: 1p3g E: [94010]
        Other proteins in same PDB: d1p3gb_, d1p3gc_, d1p3gd_, d1p3gf_, d1p3gg_, d1p3gh_
        protein/DNA complex; mutant
    14. Domains for 1p3i:
      1. 909435Domain d1p3ia_: 1p3i A: [94014]
        Other proteins in same PDB: d1p3ib_, d1p3ic_, d1p3id_, d1p3if_, d1p3ig_, d1p3ih_
        protein/DNA complex; mutant
      2. 909436Domain d1p3ie_: 1p3i E: [94018]
        Other proteins in same PDB: d1p3ib_, d1p3ic_, d1p3id_, d1p3if_, d1p3ig_, d1p3ih_
        protein/DNA complex; mutant
    15. Domains for 1p3k:
      1. 909471Domain d1p3ka_: 1p3k A: [94024]
        Other proteins in same PDB: d1p3kb_, d1p3kc_, d1p3kd_, d1p3kf_, d1p3kg_, d1p3kh_
        protein/DNA complex; mutant
      2. 909472Domain d1p3ke_: 1p3k E: [94028]
        Other proteins in same PDB: d1p3kb_, d1p3kc_, d1p3kd_, d1p3kf_, d1p3kg_, d1p3kh_
        protein/DNA complex; mutant
    16. Domains for 1p3l:
      1. 909441Domain d1p3la_: 1p3l A: [94032]
        Other proteins in same PDB: d1p3lb_, d1p3lc_, d1p3ld_, d1p3lf_, d1p3lg_, d1p3lh_
        protein/DNA complex; mutant
      2. 909442Domain d1p3le_: 1p3l E: [94036]
        Other proteins in same PDB: d1p3lb_, d1p3lc_, d1p3ld_, d1p3lf_, d1p3lg_, d1p3lh_
        protein/DNA complex; mutant
    17. Domains for 1p3m:
      1. 909469Domain d1p3ma_: 1p3m A: [94040]
        Other proteins in same PDB: d1p3mb_, d1p3mc_, d1p3md_, d1p3mf_, d1p3mg_, d1p3mh_
        protein/DNA complex; mutant
      2. 909470Domain d1p3me_: 1p3m E: [94044]
        Other proteins in same PDB: d1p3mb_, d1p3mc_, d1p3md_, d1p3mf_, d1p3mg_, d1p3mh_
        protein/DNA complex; mutant
    18. Domains for 1p3o:
      1. 909453Domain d1p3oa_: 1p3o A: [94049]
        Other proteins in same PDB: d1p3ob_, d1p3oc_, d1p3od_, d1p3of_, d1p3og_, d1p3oh_
        protein/DNA complex; mutant
      2. 909454Domain d1p3oe_: 1p3o E: [94053]
        Other proteins in same PDB: d1p3ob_, d1p3oc_, d1p3od_, d1p3of_, d1p3og_, d1p3oh_
        protein/DNA complex; mutant
    19. Domains for 1p3p:
      1. 909447Domain d1p3pa_: 1p3p A: [94057]
        Other proteins in same PDB: d1p3pb_, d1p3pc_, d1p3pd_, d1p3pf_, d1p3pg_, d1p3ph_
        protein/DNA complex; mutant
      2. 909448Domain d1p3pe_: 1p3p E: [94061]
        Other proteins in same PDB: d1p3pb_, d1p3pc_, d1p3pd_, d1p3pf_, d1p3pg_, d1p3ph_
        protein/DNA complex; mutant
    20. Domains for 1s32:
      1. 909427Domain d1s32a_: 1s32 A: [98412]
        Other proteins in same PDB: d1s32b_, d1s32c_, d1s32d_, d1s32f_, d1s32g_, d1s32h_
        protein/DNA complex; complexed with cl, imt, mn, ogg
      2. 909428Domain d1s32e_: 1s32 E: [98416]
        Other proteins in same PDB: d1s32b_, d1s32c_, d1s32d_, d1s32f_, d1s32g_, d1s32h_
        protein/DNA complex; complexed with cl, imt, mn, ogg
    21. Domains for 1zbb:
      1. 909500Domain d1zbba1: 1zbb A:39-135 [145985]
        Other proteins in same PDB: d1zbbb1, d1zbbd1, d1zbbf1
        automatically matched to d1p3ie_
        protein/DNA complex
      2. 909501Domain d1zbbe1: 1zbb E:39-135 [145988]
        Other proteins in same PDB: d1zbbb1, d1zbbd1, d1zbbf1
        automatically matched to d1p3ie_
        protein/DNA complex
    22. Domains for 1zla:
      1. 909478Domain d1zlaa_: 1zla A: [125240]
        Other proteins in same PDB: d1zlab1, d1zlac1, d1zlad1, d1zlaf1, d1zlag1, d1zlah1
        automated match to d1kx5a_
        protein/DNA complex
      2. 909479Domain d1zlae_: 1zla E: [125244]
        Other proteins in same PDB: d1zlab1, d1zlac1, d1zlad1, d1zlaf1, d1zlag1, d1zlah1
        automated match to d1kx5a_
        protein/DNA complex
    23. Domains for 2fj7:
      1. 909494Domain d2fj7a1: 2fj7 A:38-135 [133548]
        Other proteins in same PDB: d2fj7b1, d2fj7d1, d2fj7f1, d2fj7h1
        automatically matched to d1p3ie_
        protein/DNA complex
      2. 909495Domain d2fj7e1: 2fj7 E:38-135 [133551]
        Other proteins in same PDB: d2fj7b1, d2fj7d1, d2fj7f1, d2fj7h1
        automatically matched to d1p3ie_
        protein/DNA complex
    24. Domain for 2io5:
    25. Domains for 2nzd:
      1. 909463Domain d2nzda_: 2nzd A: [138848]
        Other proteins in same PDB: d2nzdb1, d2nzdc_, d2nzdf1, d2nzdg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn
      2. 909464Domain d2nzde_: 2nzd E: [138851]
        Other proteins in same PDB: d2nzdb1, d2nzdc_, d2nzdf1, d2nzdg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn
    26. Domains for 3b6f:
      1. 909496Domain d3b6fa1: 3b6f A:33-135 [154884]
        Other proteins in same PDB: d3b6fb1, d3b6fc1, d3b6fd1, d3b6ff1, d3b6fg1, d3b6fh1
        automatically matched to d1aoie_
        protein/DNA complex; complexed with mn
      2. 909497Domain d3b6fe1: 3b6f E:33-135 [154888]
        Other proteins in same PDB: d3b6fb1, d3b6fc1, d3b6fd1, d3b6ff1, d3b6fg1, d3b6fh1
        automatically matched to d1aoie_
        protein/DNA complex; complexed with mn
    27. Domains for 3b6g:
      1. 909498Domain d3b6ga1: 3b6g A:33-135 [154892]
        Other proteins in same PDB: d3b6gb1, d3b6gc1, d3b6gd1, d3b6gf1, d3b6gg1, d3b6gh1
        automatically matched to d1aoie_
        protein/DNA complex; complexed with mn
      2. 909499Domain d3b6ge1: 3b6g E:33-135 [154896]
        Other proteins in same PDB: d3b6gb1, d3b6gc1, d3b6gd1, d3b6gf1, d3b6gg1, d3b6gh1
        automatically matched to d1aoie_
        protein/DNA complex; complexed with mn
    28. Domains for 3c1b:
      1. 909431Domain d3c1ba_: 3c1b A: [155851]
        Other proteins in same PDB: d3c1bb_, d3c1bc1, d3c1bd1, d3c1bf_, d3c1bg1, d3c1bh1
        automated match to d1kx5a_
        protein/DNA complex
      2. 909432Domain d3c1be_: 3c1b E: [155855]
        Other proteins in same PDB: d3c1bb_, d3c1bc1, d3c1bd1, d3c1bf_, d3c1bg1, d3c1bh1
        automated match to d1kx5a_
        protein/DNA complex
    29. Domains for 3kuy:
      1. 909488Domain d3kuya_: 3kuy A: [179728]
        Other proteins in same PDB: d3kuyc_, d3kuyg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with atv, mn
      2. 909489Domain d3kuye_: 3kuy E: [179730]
        Other proteins in same PDB: d3kuyc_, d3kuyg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with atv, mn
    30. Domains for 3lel:
      1. 909490Domain d3lela_: 3lel A: [180229]
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn
      2. 909491Domain d3lele_: 3lel E: [180230]
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn
      3. 909492Domain d3lelk_: 3lel K: [180231]
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn
      4. 909493Domain d3lelo_: 3lel O: [180232]
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn
    31. Domains for 3lja:
      1. 909451Domain d3ljaa_: 3lja A: [180318]
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn, so4
      2. 909452Domain d3ljae_: 3lja E: [180319]
        automated match to d1kx5a_
        protein/DNA complex; complexed with mn, so4
    32. Domains for 3lz0:
      1. 909482Domain d3lz0a_: 3lz0 A: [180643]
        Other proteins in same PDB: d3lz0c_, d3lz0g_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
      2. 909483Domain d3lz0e_: 3lz0 E: [180645]
        Other proteins in same PDB: d3lz0c_, d3lz0g_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
    33. Domains for 3lz1:
      1. 909484Domain d3lz1a_: 3lz1 A: [180647]
        Other proteins in same PDB: d3lz1c_, d3lz1g_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
      2. 909485Domain d3lz1e_: 3lz1 E: [180649]
        Other proteins in same PDB: d3lz1c_, d3lz1g_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn
    34. Domains for 3mgp:
      1. 909449Domain d3mgpa_: 3mgp A: [181193]
        Other proteins in same PDB: d3mgpc_, d3mgpg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, co
      2. 909450Domain d3mgpe_: 3mgp E: [181195]
        Other proteins in same PDB: d3mgpc_, d3mgpg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, co
    35. Domains for 3mgq:
      1. 909467Domain d3mgqa_: 3mgq A: [181197]
        Other proteins in same PDB: d3mgqc_, d3mgqg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, ni
      2. 909468Domain d3mgqe_: 3mgq E: [181199]
        Other proteins in same PDB: d3mgqc_, d3mgqg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, ni
    36. Domains for 3mgr:
      1. 909437Domain d3mgra_: 3mgr A: [181201]
        Other proteins in same PDB: d3mgrc_, d3mgrg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn, rb
      2. 909438Domain d3mgre_: 3mgr E: [181203]
        Other proteins in same PDB: d3mgrc_, d3mgrg_
        automated match to d1kx5a_
        protein/DNA complex; complexed with cl, mn, rb
    37. Domains for 3mnn:
      1. 909455Domain d3mnna_: 3mnn A: [181451]
        Other proteins in same PDB: d3mnnc_, d3mnng_
        automated match to d1kx5a_
        protein/DNA complex; complexed with mg, mml, ptw, ru, so4
      2. 909456Domain d3mnne_: 3mnn E: [181453]
        Other proteins in same PDB: d3mnnc_, d3mnng_
        automated match to d1kx5a_
        protein/DNA complex; complexed with mg, mml, ptw, ru, so4
    38. Domains for 3mvd:
      1. 909445Domain d3mvda_: 3mvd A: [181592]
        automated match to d1kx5a_
        protein/DNA complex
      2. 909446Domain d3mvde_: 3mvd E: [181593]
        automated match to d1kx5a_
        protein/DNA complex
  2. 909502Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [68986] (1 PDB entry)
  3. 909505Chicken (Gallus gallus), erythrocytes [TaxId:9031] [47123] (5 PDB entries)
    Uniprot P84229
    1. Domains for 1eqz:
      1. 909510Domain d1eqzc_: 1eqz C: [16456]
        Other proteins in same PDB: d1eqza_, d1eqzb_, d1eqzd_, d1eqze_, d1eqzf_, d1eqzh_
        protein/DNA complex; complexed with cac, cl, k, mn
      2. 909511Domain d1eqzg_: 1eqz G: [16457]
        Other proteins in same PDB: d1eqza_, d1eqzb_, d1eqzd_, d1eqze_, d1eqzf_, d1eqzh_
        protein/DNA complex; complexed with cac, cl, k, mn
    2. Domain for 1hio:
    3. Domains for 1hq3:
      1. 909508Domain d1hq3c_: 1hq3 C: [16454]
        Other proteins in same PDB: d1hq3a_, d1hq3b_, d1hq3d_, d1hq3e_, d1hq3f_, d1hq3h_
        complexed with cl, po4
      2. 909509Domain d1hq3g_: 1hq3 G: [16455]
        Other proteins in same PDB: d1hq3a_, d1hq3b_, d1hq3d_, d1hq3e_, d1hq3f_, d1hq3h_
        complexed with cl, po4
    4. Domains for 1tzy:
      1. 909506Domain d1tzyc_: 1tzy C: [107532]
        Other proteins in same PDB: d1tzya_, d1tzyb_, d1tzyd_, d1tzye_, d1tzyf_, d1tzyh_
        complexed with cl, po4
      2. 909507Domain d1tzyg_: 1tzy G: [107536]
        Other proteins in same PDB: d1tzya_, d1tzyb_, d1tzyd_, d1tzye_, d1tzyf_, d1tzyh_
        complexed with cl, po4
    5. Domain for 2hio:
  4. 909514Fruit fly (Drosophila melanogaster) [TaxId:7227] [158386] (1 PDB entry)
  5. 909517Mouse (Mus musculus), H3.1 [TaxId:10090] [140395] (1 PDB entry)
    Uniprot P68433 38-135

More info for Protein Histone H3 from a.22.1.1: Nucleosome core histones

Timeline for Protein Histone H3 from a.22.1.1: Nucleosome core histones: