SCOPe 2.01: Protein: Histone H3

Lineage for Protein: Histone H3

Root: SCOPe 2.01
Class a: All alpha proteins [46456] (284 folds)
Fold a.22: Histone-fold [47112] (1 superfamily)
core: 3 helices; long middle helix is flanked at each end with shorter ones
Superfamily a.22.1: Histone-fold [47113] (4 families)
Family a.22.1.1: Nucleosome core histones [47114] (6 proteins)
form octamers composed of two copies of each of the four histones
Protein Histone H3 [47122] (5 species)

Species:

African clawed frog (Xenopus laevis) [TaxId:8355] [47124] (38 PDB entries)
1. Domains for 1aoi:
  1. Domain d1aoia_: 1aoi A: [16462]
    Other proteins in same PDB: d1aoib_, d1aoic_, d1aoid_, d1aoif_, d1aoig_, d1aoih_
    protein/DNA complex; complexed with mn
  2. Domain d1aoie_: 1aoi E: [16463]
    Other proteins in same PDB: d1aoib_, d1aoic_, d1aoid_, d1aoif_, d1aoig_, d1aoih_
    protein/DNA complex; complexed with mn
2. Domains for 1f66:
  1. Domain d1f66a_: 1f66 A: [16460]
    Other proteins in same PDB: d1f66b_, d1f66c_, d1f66d_, d1f66f_, d1f66g_, d1f66h_
    protein/DNA complex; complexed with mn
  2. Domain d1f66e_: 1f66 E: [16461]
    Other proteins in same PDB: d1f66b_, d1f66c_, d1f66d_, d1f66f_, d1f66g_, d1f66h_
    protein/DNA complex; complexed with mn
3. Domains for 1kx3:
  1. Domain d1kx3a_: 1kx3 A: [77577]
    Other proteins in same PDB: d1kx3b_, d1kx3c_, d1kx3d_, d1kx3f_, d1kx3g_, d1kx3h_
    protein/DNA complex; complexed with mn
  2. Domain d1kx3e_: 1kx3 E: [77581]
    Other proteins in same PDB: d1kx3b_, d1kx3c_, d1kx3d_, d1kx3f_, d1kx3g_, d1kx3h_
    protein/DNA complex; complexed with mn
4. Domains for 1kx4:
  1. Domain d1kx4a_: 1kx4 A: [77585]
    Other proteins in same PDB: d1kx4b_, d1kx4c_, d1kx4d_, d1kx4f_, d1kx4g_, d1kx4h_
    protein/DNA complex; complexed with cl, mn
  2. Domain d1kx4e_: 1kx4 E: [77589]
    Other proteins in same PDB: d1kx4b_, d1kx4c_, d1kx4d_, d1kx4f_, d1kx4g_, d1kx4h_
    protein/DNA complex; complexed with cl, mn
5. Domains for 1kx5:
  1. Domain d1kx5a_: 1kx5 A: [77593]
    Other proteins in same PDB: d1kx5b_, d1kx5c_, d1kx5d_, d1kx5f_, d1kx5g_, d1kx5h_
    protein/DNA complex; complexed with cl, mn
  2. Domain d1kx5e_: 1kx5 E: [77597]
    Other proteins in same PDB: d1kx5b_, d1kx5c_, d1kx5d_, d1kx5f_, d1kx5g_, d1kx5h_
    protein/DNA complex; complexed with cl, mn
6. Domains for 1m18:
  1. Domain d1m18a_: 1m18 A: [78371]
    Other proteins in same PDB: d1m18b_, d1m18c_, d1m18d_, d1m18f_, d1m18g_, d1m18h_
    protein/DNA complex; complexed with abu, imt, mn
  2. Domain d1m18e_: 1m18 E: [78375]
    Other proteins in same PDB: d1m18b_, d1m18c_, d1m18d_, d1m18f_, d1m18g_, d1m18h_
    protein/DNA complex; complexed with abu, imt, mn
7. Domains for 1m19:
  1. Domain d1m19a_: 1m19 A: [78379]
    Other proteins in same PDB: d1m19b_, d1m19c_, d1m19d_, d1m19f_, d1m19g_, d1m19h_
    protein/DNA complex; complexed with imt, mn
  2. Domain d1m19e_: 1m19 E: [78383]
    Other proteins in same PDB: d1m19b_, d1m19c_, d1m19d_, d1m19f_, d1m19g_, d1m19h_
    protein/DNA complex; complexed with imt, mn
8. Domains for 1m1a:
  1. Domain d1m1aa_: 1m1a A: [78387]
    Other proteins in same PDB: d1m1ab_, d1m1ac_, d1m1ad_, d1m1af_, d1m1ag_, d1m1ah_
    protein/DNA complex; complexed with imt, mn
  2. Domain d1m1ae_: 1m1a E: [78391]
    Other proteins in same PDB: d1m1ab_, d1m1ac_, d1m1ad_, d1m1af_, d1m1ag_, d1m1ah_
    protein/DNA complex; complexed with imt, mn
9. Domains for 1p34:
  1. Domain d1p34a_: 1p34 A: [93970]
    Other proteins in same PDB: d1p34b_, d1p34c_, d1p34d_, d1p34f_, d1p34g_, d1p34h_
    protein/DNA complex; mutant
  2. Domain d1p34e_: 1p34 E: [93974]
    Other proteins in same PDB: d1p34b_, d1p34c_, d1p34d_, d1p34f_, d1p34g_, d1p34h_
    protein/DNA complex; mutant
10. Domains for 1p3a:
  1. Domain d1p3aa_: 1p3a A: [93980]
    Other proteins in same PDB: d1p3ab_, d1p3ac_, d1p3ad_, d1p3af_, d1p3ag_, d1p3ah_
    protein/DNA complex; mutant
  2. Domain d1p3ae_: 1p3a E: [93984]
    Other proteins in same PDB: d1p3ab_, d1p3ac_, d1p3ad_, d1p3af_, d1p3ag_, d1p3ah_
    protein/DNA complex; mutant
11. Domains for 1p3b:
  1. Domain d1p3ba_: 1p3b A: [93988]
    Other proteins in same PDB: d1p3bb_, d1p3bc_, d1p3bd_, d1p3bf_, d1p3bg_, d1p3bh_
    protein/DNA complex; mutant
  2. Domain d1p3be_: 1p3b E: [93992]
    Other proteins in same PDB: d1p3bb_, d1p3bc_, d1p3bd_, d1p3bf_, d1p3bg_, d1p3bh_
    protein/DNA complex; mutant
12. Domains for 1p3f:
  1. Domain d1p3fa_: 1p3f A: [93998]
    Other proteins in same PDB: d1p3fb_, d1p3fc_, d1p3fd_, d1p3ff_, d1p3fg_, d1p3fh_
    protein/DNA complex; mutant
  2. Domain d1p3fe_: 1p3f E: [94002]
    Other proteins in same PDB: d1p3fb_, d1p3fc_, d1p3fd_, d1p3ff_, d1p3fg_, d1p3fh_
    protein/DNA complex; mutant
13. Domains for 1p3g:
  1. Domain d1p3ga_: 1p3g A: [94006]
    Other proteins in same PDB: d1p3gb_, d1p3gc_, d1p3gd_, d1p3gf_, d1p3gg_, d1p3gh_
    protein/DNA complex; mutant
  2. Domain d1p3ge_: 1p3g E: [94010]
    Other proteins in same PDB: d1p3gb_, d1p3gc_, d1p3gd_, d1p3gf_, d1p3gg_, d1p3gh_
    protein/DNA complex; mutant
14. Domains for 1p3i:
  1. Domain d1p3ia_: 1p3i A: [94014]
    Other proteins in same PDB: d1p3ib_, d1p3ic_, d1p3id_, d1p3if_, d1p3ig_, d1p3ih_
    protein/DNA complex; mutant
  2. Domain d1p3ie_: 1p3i E: [94018]
    Other proteins in same PDB: d1p3ib_, d1p3ic_, d1p3id_, d1p3if_, d1p3ig_, d1p3ih_
    protein/DNA complex; mutant
15. Domains for 1p3k:
  1. Domain d1p3ka_: 1p3k A: [94024]
    Other proteins in same PDB: d1p3kb_, d1p3kc_, d1p3kd_, d1p3kf_, d1p3kg_, d1p3kh_
    protein/DNA complex; mutant
  2. Domain d1p3ke_: 1p3k E: [94028]
    Other proteins in same PDB: d1p3kb_, d1p3kc_, d1p3kd_, d1p3kf_, d1p3kg_, d1p3kh_
    protein/DNA complex; mutant
16. Domains for 1p3l:
  1. Domain d1p3la_: 1p3l A: [94032]
    Other proteins in same PDB: d1p3lb_, d1p3lc_, d1p3ld_, d1p3lf_, d1p3lg_, d1p3lh_
    protein/DNA complex; mutant
  2. Domain d1p3le_: 1p3l E: [94036]
    Other proteins in same PDB: d1p3lb_, d1p3lc_, d1p3ld_, d1p3lf_, d1p3lg_, d1p3lh_
    protein/DNA complex; mutant
17. Domains for 1p3m:
  1. Domain d1p3ma_: 1p3m A: [94040]
    Other proteins in same PDB: d1p3mb_, d1p3mc_, d1p3md_, d1p3mf_, d1p3mg_, d1p3mh_
    protein/DNA complex; mutant
  2. Domain d1p3me_: 1p3m E: [94044]
    Other proteins in same PDB: d1p3mb_, d1p3mc_, d1p3md_, d1p3mf_, d1p3mg_, d1p3mh_
    protein/DNA complex; mutant
18. Domains for 1p3o:
  1. Domain d1p3oa_: 1p3o A: [94049]
    Other proteins in same PDB: d1p3ob_, d1p3oc_, d1p3od_, d1p3of_, d1p3og_, d1p3oh_
    protein/DNA complex; mutant
  2. Domain d1p3oe_: 1p3o E: [94053]
    Other proteins in same PDB: d1p3ob_, d1p3oc_, d1p3od_, d1p3of_, d1p3og_, d1p3oh_
    protein/DNA complex; mutant
19. Domains for 1p3p:
  1. Domain d1p3pa_: 1p3p A: [94057]
    Other proteins in same PDB: d1p3pb_, d1p3pc_, d1p3pd_, d1p3pf_, d1p3pg_, d1p3ph_
    protein/DNA complex; mutant
  2. Domain d1p3pe_: 1p3p E: [94061]
    Other proteins in same PDB: d1p3pb_, d1p3pc_, d1p3pd_, d1p3pf_, d1p3pg_, d1p3ph_
    protein/DNA complex; mutant
20. Domains for 1s32:
  1. Domain d1s32a_: 1s32 A: [98412]
    Other proteins in same PDB: d1s32b_, d1s32c_, d1s32d_, d1s32f_, d1s32g_, d1s32h_
    protein/DNA complex; complexed with cl, imt, mn, ogg
  2. Domain d1s32e_: 1s32 E: [98416]
    Other proteins in same PDB: d1s32b_, d1s32c_, d1s32d_, d1s32f_, d1s32g_, d1s32h_
    protein/DNA complex; complexed with cl, imt, mn, ogg
21. Domains for 1zbb:
  1. Domain d1zbba1: 1zbb A:39-135 [145985]
    Other proteins in same PDB: d1zbbb1, d1zbbd1, d1zbbf1
    automatically matched to d1p3ie_
    protein/DNA complex
  2. Domain d1zbbe1: 1zbb E:39-135 [145988]
    Other proteins in same PDB: d1zbbb1, d1zbbd1, d1zbbf1
    automatically matched to d1p3ie_
    protein/DNA complex
22. Domains for 1zla:
  1. Domain d1zlaa_: 1zla A: [125240]
    Other proteins in same PDB: d1zlab1, d1zlac1, d1zlad1, d1zlaf1, d1zlag1, d1zlah1
    automated match to d1kx5a_
    protein/DNA complex
  2. Domain d1zlae_: 1zla E: [125244]
    Other proteins in same PDB: d1zlab1, d1zlac1, d1zlad1, d1zlaf1, d1zlag1, d1zlah1
    automated match to d1kx5a_
    protein/DNA complex
23. Domains for 2fj7:
  1. Domain d2fj7a1: 2fj7 A:38-135 [133548]
    Other proteins in same PDB: d2fj7b1, d2fj7d1, d2fj7f1, d2fj7h1
    automatically matched to d1p3ie_
    protein/DNA complex
  2. Domain d2fj7e1: 2fj7 E:38-135 [133551]
    Other proteins in same PDB: d2fj7b1, d2fj7d1, d2fj7f1, d2fj7h1
    automatically matched to d1p3ie_
    protein/DNA complex
24. Domain for 2io5:
  - Domain d2io5b_: 2io5 B: [161465]
    Other proteins in same PDB: d2io5a1, d2io5c1
    automated match to d1kx5a_
25. Domains for 2nzd:
  1. Domain d2nzda_: 2nzd A: [138848]
    Other proteins in same PDB: d2nzdb1, d2nzdc_, d2nzdf1, d2nzdg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn
  2. Domain d2nzde_: 2nzd E: [138851]
    Other proteins in same PDB: d2nzdb1, d2nzdc_, d2nzdf1, d2nzdg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn
26. Domains for 3b6f:
  1. Domain d3b6fa1: 3b6f A:33-135 [154884]
    Other proteins in same PDB: d3b6fb1, d3b6fc1, d3b6fd1, d3b6ff1, d3b6fg1, d3b6fh1
    automatically matched to d1aoie_
    protein/DNA complex; complexed with mn
  2. Domain d3b6fe1: 3b6f E:33-135 [154888]
    Other proteins in same PDB: d3b6fb1, d3b6fc1, d3b6fd1, d3b6ff1, d3b6fg1, d3b6fh1
    automatically matched to d1aoie_
    protein/DNA complex; complexed with mn
27. Domains for 3b6g:
  1. Domain d3b6ga1: 3b6g A:33-135 [154892]
    Other proteins in same PDB: d3b6gb1, d3b6gc1, d3b6gd1, d3b6gf1, d3b6gg1, d3b6gh1
    automatically matched to d1aoie_
    protein/DNA complex; complexed with mn
  2. Domain d3b6ge1: 3b6g E:33-135 [154896]
    Other proteins in same PDB: d3b6gb1, d3b6gc1, d3b6gd1, d3b6gf1, d3b6gg1, d3b6gh1
    automatically matched to d1aoie_
    protein/DNA complex; complexed with mn
28. Domains for 3c1b:
  1. Domain d3c1ba_: 3c1b A: [155851]
    Other proteins in same PDB: d3c1bb_, d3c1bc1, d3c1bd1, d3c1bf_, d3c1bg1, d3c1bh1
    automated match to d1kx5a_
    protein/DNA complex
  2. Domain d3c1be_: 3c1b E: [155855]
    Other proteins in same PDB: d3c1bb_, d3c1bc1, d3c1bd1, d3c1bf_, d3c1bg1, d3c1bh1
    automated match to d1kx5a_
    protein/DNA complex
29. Domains for 3kuy:
  1. Domain d3kuya_: 3kuy A: [179728]
    Other proteins in same PDB: d3kuyc_, d3kuyg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with atv, mn
  2. Domain d3kuye_: 3kuy E: [179730]
    Other proteins in same PDB: d3kuyc_, d3kuyg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with atv, mn
30. Domains for 3lel:
  1. Domain d3lela_: 3lel A: [180229]
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn
  2. Domain d3lele_: 3lel E: [180230]
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn
  3. Domain d3lelk_: 3lel K: [180231]
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn
  4. Domain d3lelo_: 3lel O: [180232]
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn
31. Domains for 3lja:
  1. Domain d3ljaa_: 3lja A: [180318]
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn, so4
  2. Domain d3ljae_: 3lja E: [180319]
    automated match to d1kx5a_
    protein/DNA complex; complexed with mn, so4
32. Domains for 3lz0:
  1. Domain d3lz0a_: 3lz0 A: [180643]
    Other proteins in same PDB: d3lz0c_, d3lz0g_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn
  2. Domain d3lz0e_: 3lz0 E: [180645]
    Other proteins in same PDB: d3lz0c_, d3lz0g_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn
33. Domains for 3lz1:
  1. Domain d3lz1a_: 3lz1 A: [180647]
    Other proteins in same PDB: d3lz1c_, d3lz1g_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn
  2. Domain d3lz1e_: 3lz1 E: [180649]
    Other proteins in same PDB: d3lz1c_, d3lz1g_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn
34. Domains for 3mgp:
  1. Domain d3mgpa_: 3mgp A: [181193]
    Other proteins in same PDB: d3mgpc_, d3mgpg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, co
  2. Domain d3mgpe_: 3mgp E: [181195]
    Other proteins in same PDB: d3mgpc_, d3mgpg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, co
35. Domains for 3mgq:
  1. Domain d3mgqa_: 3mgq A: [181197]
    Other proteins in same PDB: d3mgqc_, d3mgqg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, ni
  2. Domain d3mgqe_: 3mgq E: [181199]
    Other proteins in same PDB: d3mgqc_, d3mgqg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, ni
36. Domains for 3mgr:
  1. Domain d3mgra_: 3mgr A: [181201]
    Other proteins in same PDB: d3mgrc_, d3mgrg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn, rb
  2. Domain d3mgre_: 3mgr E: [181203]
    Other proteins in same PDB: d3mgrc_, d3mgrg_
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn, rb
37. Domains for 3mnn:
  1. Domain d3mnna_: 3mnn A: [181451]
    Other proteins in same PDB: d3mnnc_, d3mnng_
    automated match to d1kx5a_
    protein/DNA complex; complexed with mg, mml, ptw, ru, so4
  2. Domain d3mnne_: 3mnn E: [181453]
    Other proteins in same PDB: d3mnnc_, d3mnng_
    automated match to d1kx5a_
    protein/DNA complex; complexed with mg, mml, ptw, ru, so4
38. Domains for 3mvd:
  1. Domain d3mvda_: 3mvd A: [181592]
    automated match to d1kx5a_
    protein/DNA complex
  2. Domain d3mvde_: 3mvd E: [181593]
    automated match to d1kx5a_
    protein/DNA complex
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [68986] (1 PDB entry)
- Domains for 1id3:
  1. Domain d1id3a_: 1id3 A: [66112]
    Other proteins in same PDB: d1id3b_, d1id3c_, d1id3d_, d1id3f_, d1id3g_, d1id3h_
    protein/DNA complex; complexed with mn
  2. Domain d1id3e_: 1id3 E: [66116]
    Other proteins in same PDB: d1id3b_, d1id3c_, d1id3d_, d1id3f_, d1id3g_, d1id3h_
    protein/DNA complex; complexed with mn
Chicken (Gallus gallus), erythrocytes [TaxId:9031] [47123] (5 PDB entries)
Uniprot P84229
1. Domains for 1eqz:
  1. Domain d1eqzc_: 1eqz C: [16456]
    Other proteins in same PDB: d1eqza_, d1eqzb_, d1eqzd_, d1eqze_, d1eqzf_, d1eqzh_
    protein/DNA complex; complexed with cac, cl, k, mn
  2. Domain d1eqzg_: 1eqz G: [16457]
    Other proteins in same PDB: d1eqza_, d1eqzb_, d1eqzd_, d1eqze_, d1eqzf_, d1eqzh_
    protein/DNA complex; complexed with cac, cl, k, mn
2. Domain for 1hio:
  - Domain d1hioc_: 1hio C: [16459]
    Other proteins in same PDB: d1hioa_, d1hiob_, d1hiod_
3. Domains for 1hq3:
  1. Domain d1hq3c_: 1hq3 C: [16454]
    Other proteins in same PDB: d1hq3a_, d1hq3b_, d1hq3d_, d1hq3e_, d1hq3f_, d1hq3h_
    complexed with cl, po4
  2. Domain d1hq3g_: 1hq3 G: [16455]
    Other proteins in same PDB: d1hq3a_, d1hq3b_, d1hq3d_, d1hq3e_, d1hq3f_, d1hq3h_
    complexed with cl, po4
4. Domains for 1tzy:
  1. Domain d1tzyc_: 1tzy C: [107532]
    Other proteins in same PDB: d1tzya_, d1tzyb_, d1tzyd_, d1tzye_, d1tzyf_, d1tzyh_
    complexed with cl, po4
  2. Domain d1tzyg_: 1tzy G: [107536]
    Other proteins in same PDB: d1tzya_, d1tzyb_, d1tzyd_, d1tzye_, d1tzyf_, d1tzyh_
    complexed with cl, po4
5. Domain for 2hio:
  - Domain d2hioc_: 2hio C: [16458]
    Other proteins in same PDB: d2hioa_, d2hiob_, d2hiod_
Fruit fly (Drosophila melanogaster) [TaxId:7227] [158386] (1 PDB entry)
- Domains for 2pyo:
  1. Domain d2pyoa_: 2pyo A: [149949]
    Other proteins in same PDB: d2pyob1, d2pyof1
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn
  2. Domain d2pyoe_: 2pyo E: [149951]
    Other proteins in same PDB: d2pyob1, d2pyof1
    automated match to d1kx5a_
    protein/DNA complex; complexed with cl, mn
Mouse (Mus musculus), H3.1 [TaxId:10090] [140395] (1 PDB entry)
Uniprot P68433 38-135
- Domains for 1u35:
  1. Domain d1u35a1: 1u35 A:438-535 [119493]
    Other proteins in same PDB: d1u35b1, d1u35c1, d1u35d1, d1u35f1, d1u35g1, d1u35h1
    protein/DNA complex
  2. Domain d1u35e1: 1u35 E:638-735 [119497]
    Other proteins in same PDB: d1u35b1, d1u35c1, d1u35d1, d1u35f1, d1u35g1, d1u35h1
    automatically matched to 1U35 A:438-535
    protein/DNA complex

More info for Protein Histone H3 from a.22.1.1: Nucleosome core histones

Timeline for Protein Histone H3 from a.22.1.1: Nucleosome core histones:

Protein Histone H3 from a.22.1.1: Nucleosome core histones first appeared (with stable ids) in SCOP 1.55
Protein Histone H3 from a.22.1.1: Nucleosome core histones appears in SCOP 1.75
Protein Histone H3 from a.22.1.1: Nucleosome core histones appears in SCOPe 2.02
Protein Histone H3 from a.22.1.1: Nucleosome core histones appears in the current release, SCOPe 2.08