Lineage for Protein: automated matches

  1. Root: SCOPe 2.07
  2. 2413226Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2455315Fold c.47: Thioredoxin fold [52832] (2 superfamilies)
    core: 3 layers, a/b/a; mixed beta-sheet of 4 strands, order 4312; strand 3 is antiparallel to the rest
  4. 2455316Superfamily c.47.1: Thioredoxin-like [52833] (24 families) (S)
  5. 2457306Family c.47.1.13: DsbA-like [100953] (4 protein domains)
    contains an all-alpha subdomain insertion
  6. 2457367Protein automated matches [190208] (8 species)
    not a true protein

Species:

  1. 2457368Escherichia coli K-12 [TaxId:83333] [186961] (1 PDB entry)
  2. 2457371Escherichia coli [TaxId:562] [186965] (1 PDB entry)
  3. 2457374Human (Homo sapiens) [TaxId:9606] [188162] (3 PDB entries)
    1. Domains for 1yzx:
      1. 2457384Domain d1yzxa_: 1yzx A: [162348]
        automated match to d1r4wa_
        complexed with gsf
      2. 2457385Domain d1yzxb_: 1yzx B: [162349]
        automated match to d1r4wa_
        complexed with gsf
    2. Domains for 3rpn:
      1. 2457378Domain d3rpna_: 3rpn A: [193692]
        automated match to d3rpnd_
        complexed with gtx
      2. 2457379Domain d3rpnb_: 3rpn B: [200502]
        automated match to d3rpnd_
        complexed with gtx
      3. 2457380Domain d3rpnc_: 3rpn C: [200503]
        automated match to d3rpnd_
        complexed with gtx
      4. 2457381Domain d3rpnd_: 3rpn D: [185092]
        automated match to d1r4wa_
        complexed with gtx
      5. 2457382Domain d3rpne_: 3rpn E: [185093]
        automated match to d1r4wa_
        complexed with gtx
      6. 2457383Domain d3rpnf_: 3rpn F: [185094]
        automated match to d1r4wa_
        complexed with gtx
    3. Domains for 3rpp:
      1. 2457375Domain d3rppa_: 3rpp A: [215974]
        automated match to d3rpnd_
      2. 2457376Domain d3rppb_: 3rpp B: [215975]
        automated match to d3rpnd_
      3. 2457377Domain d3rppc_: 3rpp C: [215976]
        automated match to d3rpnd_
  4. 2457386Klebsiella pneumoniae [TaxId:507522] [229321] (2 PDB entries)
    1. Domain for 2mbs:
    2. Domains for 4mcu:
      1. 2457387Domain d4mcua1: 4mcu A:1-187 [235596]
        Other proteins in same PDB: d4mcua2, d4mcub2, d4mcue2
        automated match to d4mcuc_
      2. 2457388Domain d4mcub1: 4mcu B:1-187 [235600]
        Other proteins in same PDB: d4mcua2, d4mcub2, d4mcue2
        automated match to d4mcuc_
      3. 2457389Domain d4mcuc_: 4mcu C: [229322]
        Other proteins in same PDB: d4mcua2, d4mcub2, d4mcue2
        automated match to d1a23a_
      4. 2457390Domain d4mcud_: 4mcu D: [235597]
        Other proteins in same PDB: d4mcua2, d4mcub2, d4mcue2
        automated match to d4mcuc_
      5. 2457391Domain d4mcue1: 4mcu E:1-188 [235598]
        Other proteins in same PDB: d4mcua2, d4mcub2, d4mcue2
        automated match to d4mcuc_
      6. 2457392Domain d4mcuf_: 4mcu F: [235599]
        Other proteins in same PDB: d4mcua2, d4mcub2, d4mcue2
        automated match to d4mcuc_
  5. 2457394Proteus mirabilis [TaxId:529507] [257245] (3 PDB entries)
    1. Domain for 4oce:
    2. Domains for 4ocf:
      1. 2457399Domain d4ocfa1: 4ocf A:2-187 [258027]
        Other proteins in same PDB: d4ocfa2, d4ocfb2
        automated match to d4mcue_
        complexed with scn; mutant
      2. 2457400Domain d4ocfb1: 4ocf B:2-188 [257246]
        Other proteins in same PDB: d4ocfa2, d4ocfb2
        automated match to d4mcue_
        complexed with scn; mutant
      3. 2457401Domain d4ocfc_: 4ocf C: [258026]
        Other proteins in same PDB: d4ocfa2, d4ocfb2
        automated match to d4mcue_
        complexed with scn; mutant
      4. 2457402Domain d4ocfd_: 4ocf D: [263270]
        Other proteins in same PDB: d4ocfa2, d4ocfb2
        automated match to d4mcue_
        complexed with scn; mutant
    3. Domains for 4od7:
      1. 2457395Domain d4od7a1: 4od7 A:2-187 [267030]
        Other proteins in same PDB: d4od7a2, d4od7b2, d4od7c2
        automated match to d4mcue_
        complexed with scn
      2. 2457396Domain d4od7b1: 4od7 B:2-187 [267031]
        Other proteins in same PDB: d4od7a2, d4od7b2, d4od7c2
        automated match to d4mcue_
        complexed with scn
      3. 2457397Domain d4od7c1: 4od7 C:2-187 [267032]
        Other proteins in same PDB: d4od7a2, d4od7b2, d4od7c2
        automated match to d4mcue_
        complexed with scn
  6. 2457403Salmonella enterica [TaxId:216597] [189264] (1 PDB entry)
  7. 2457405Vibrio cholerae [TaxId:243277] [194420] (1 PDB entry)
  8. 2457407Vibrio cholerae [TaxId:666] [255240] (1 PDB entry)

More info for Protein automated matches from c.47.1.13: DsbA-like

Timeline for Protein automated matches from c.47.1.13: DsbA-like: