SCOPe 2.07: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.07
Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members
Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
"palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain
Family e.8.1.2: Reverse transcriptase [56686] (3 proteins)
Protein automated matches [190211] (7 species)
not a true protein

Species:

Hiv-1 m:b_hxb2r [TaxId:11706] [187165] (10 PDB entries)
1. Domains for 2ynf:
  1. Domain d2ynfa1: 2ynf A:1-429 [207669]
    Other proteins in same PDB: d2ynfa2, d2ynfa3
    automated match to d1bqna2
    complexed with mg, tar, whu; mutant
  2. Domain d2ynfb_: 2ynf B: [207671]
    Other proteins in same PDB: d2ynfa2, d2ynfa3
    automated match to d1hqeb_
    complexed with mg, tar, whu; mutant
2. Domains for 2yng:
  1. Domain d2ynga1: 2yng A:1-429 [207672]
    Other proteins in same PDB: d2ynga2, d2ynga3
    automated match to d1bqna2
    complexed with mg, srt, whu
  2. Domain d2yngb_: 2yng B: [207674]
    Other proteins in same PDB: d2ynga2, d2ynga3
    automated match to d1hqeb_
    complexed with mg, srt, whu
3. Domains for 2ynh:
  1. Domain d2ynha1: 2ynh A:1-429 [207675]
    Other proteins in same PDB: d2ynha2, d2ynha3
    automated match to d1bqna2
    complexed with eur, tar
  2. Domain d2ynhb_: 2ynh B: [207677]
    Other proteins in same PDB: d2ynha2, d2ynha3
    automated match to d1hqeb_
    complexed with eur, tar
4. Domains for 2yni:
  1. Domain d2ynia1: 2yni A:1-429 [207678]
    Other proteins in same PDB: d2ynia2, d2ynia3
    automated match to d1bqna2
    complexed with cxd, mg, tar
  2. Domain d2ynib_: 2yni B: [207680]
    Other proteins in same PDB: d2ynia2, d2ynia3
    automated match to d1hqeb_
    complexed with cxd, mg, tar
5. Domain for 3mec:
  - Domain d3mecb_: 3mec B: [181026]
    Other proteins in same PDB: d3meca1, d3meca2
    automated match to d1c1cb_
    complexed with 65b, so4
6. Domains for 3med:
  1. Domain d3meda1: 3med A:1-429 [199831]
    Other proteins in same PDB: d3meda2
    automated match to d1bqna2
    complexed with 65b, cl, so4
  2. Domain d3medb_: 3med B: [181027]
    Other proteins in same PDB: d3meda2
    automated match to d1c1cb_
    complexed with 65b, cl, so4
7. Domain for 3mee:
  - Domain d3meeb_: 3mee B: [181028]
    Other proteins in same PDB: d3meea1, d3meea2
    automated match to d1c1cb_
    complexed with so4, t27
8. Domains for 3meg:
  1. Domain d3mega1: 3meg A:1-429 [199835]
    Other proteins in same PDB: d3mega2
    automated match to d1bqna2
    complexed with so4, t27
  2. Domain d3megb_: 3meg B: [181029]
    Other proteins in same PDB: d3mega2
    automated match to d1c1cb_
    complexed with so4, t27
9. Domains for 3tam:
  1. Domain d3tama1: 3tam A:3-429 [200790]
    Other proteins in same PDB: d3tama2, d3tama3
    automated match to d1bqna2
    complexed with m06; mutant
  2. Domain d3tamb_: 3tam B: [185741]
    Other proteins in same PDB: d3tama2, d3tama3
    automated match to d1c1cb_
    complexed with m06; mutant
10. Domains for 4kv8:
  1. Domain d4kv8a1: 4kv8 A:1-429 [224481]
    Other proteins in same PDB: d4kv8a2
    automated match to d1bqna2
    complexed with 1wt, mla, suc
  2. Domain d4kv8b_: 4kv8 B: [224483]
    Other proteins in same PDB: d4kv8a2
    automated match to d2opsa1
    complexed with 1wt, mla, suc
Human immunodeficiency virus 1 [TaxId:11676] [186967] (7 PDB entries)
1. Domain for 2ban:
  - Domain d2banb_: 2ban B: [128241]
    Other proteins in same PDB: d2bana1, d2bana2
    automated match to d1bqmb_
    complexed with 357, mn
2. Domains for 2jle:
  1. Domain d2jlea1: 2jle A:1-429 [205111]
    Other proteins in same PDB: d2jlea2
    automated match to d1bqna2
    complexed with i15
  2. Domain d2jleb_: 2jle B: [230920]
    Other proteins in same PDB: d2jlea2
    automated match to d2jlea1
    complexed with i15
3. Domain for 2vg5:
  - Domain d2vg5a1: 2vg5 A:1-429 [198437]
    Other proteins in same PDB: d2vg5a2, d2vg5b_
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with nnc
4. Domains for 2vg6:
  1. Domain d2vg6a1: 2vg6 A:1-429 [238889]
    Other proteins in same PDB: d2vg6a2
    automated match to d2ykna1
    protein/DNA complex; protein/RNA complex; complexed with nnb
  2. Domain d2vg6b_: 2vg6 B: [153032]
    Other proteins in same PDB: d2vg6a2
    automated match to d3is9b_
    protein/DNA complex; protein/RNA complex; complexed with nnb
5. Domain for 2vg7:
  - Domain d2vg7a1: 2vg7 A:1-429 [198439]
    Other proteins in same PDB: d2vg7a2, d2vg7b_
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with nni
6. Domain for 2won:
  - Domain d2wonb_: 2won B: [169528]
    Other proteins in same PDB: d2wona1, d2wona2
    automated match to d1c1cb_
    complexed with zze
7. Domains for 4zhr:
  1. Domain d4zhra1: 4zhr A:1-429 [279397]
    Other proteins in same PDB: d4zhra2
    automated match to d1bqna2
    mutant
  2. Domain d4zhrb_: 4zhr B: [279396]
    Other proteins in same PDB: d4zhra2
    automated match to d2hmib_
    mutant

Human immunodeficiency virus type 1 bh10 [TaxId:11678] [225820] (18 PDB entries)

Domains for 2ykm:
1. Domain d2ykma1: 2ykm A:1-429 [207657]
  Other proteins in same PDB: d2ykma2, d2ykma3
  automated match to d1bqna2
  complexed with ca, ykn
2. Domain d2ykmb_: 2ykm B: [207659]
  Other proteins in same PDB: d2ykma2, d2ykma3
  automated match to d1hqeb_
  complexed with ca, ykn
Domains for 2ykn:
1. Domain d2ykna1: 2ykn A:1-429 [207660]
  Other proteins in same PDB: d2ykna2, d2ykna3
  automated match to d1bqna2
  complexed with ca, ykn
2. Domain d2yknb_: 2ykn B: [207662]
  Other proteins in same PDB: d2ykna2, d2ykna3
  automated match to d1hqeb_
  complexed with ca, ykn
Domains for 3ig1:
1. Domain d3ig1a1: 3ig1 A:3-429 [211671]
  Other proteins in same PDB: d3ig1a2
  automated match to d1bqna2
  protein/DNA complex; protein/RNA complex; complexed with jth, mn
2. Domain d3ig1b_: 3ig1 B: [211673]
  Other proteins in same PDB: d3ig1a2
  automated match to d1hqeb_
  protein/DNA complex; protein/RNA complex; complexed with jth, mn
Domain for 4h4o:
- Domain d4h4oa1: 4h4o A:1-429 [222384]
  Other proteins in same PDB: d4h4oa2, d4h4oa3
  automated match to d1bqna2
  complexed with 506
Domain for 4ig3:
- Domain d4ig3b_: 4ig3 B: [223160]
  Other proteins in same PDB: d4ig3a2, d4ig3a3
  automated match to d1hqeb_
  protein/DNA complex; protein/RNA complex; complexed with dms, j94, t27
Domain for 4lsn:
- Domain d4lsna1: 4lsn A:1-429 [266696]
  Other proteins in same PDB: d4lsna2, d4lsna3, d4lsnb_
  automated match to d2ykna1
  complexed with 1yr
Domain for 4o44:
- Domain d4o44a1: 4o44 A:1-429 [257220]
  Other proteins in same PDB: d4o44a2, d4o44b_
  automated match to d2ykna1
  complexed with 2rs
Domain for 4o4g:
- Domain d4o4ga1: 4o4g A:1-429 [260718]
  Other proteins in same PDB: d4o4ga2, d4o4ga3, d4o4gb_
  automated match to d2ykna1
  complexed with 2rt

Domains for 4pqu:

Domain d4pqua1: 4pqu A:1-429 [257524]
Other proteins in same PDB: d4pqua2, d4pqub_, d4pquc2, d4pqud_
automated match to d2ykna1
protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4

Domain d4pquc1: 4pqu C:1-429 [258229]
Other proteins in same PDB: d4pqua2, d4pqub_, d4pquc2, d4pqud_
automated match to d2ykna1
protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4

Domains for 4puo:

Domain d4puoa1: 4puo A:1-429 [263569]
Other proteins in same PDB: d4puoa2, d4puoa3, d4puob_, d4puoc2, d4puoc3, d4puod_
automated match to d2ykna1
protein/DNA complex; protein/RNA complex; complexed with nvp

Domain d4puoc1: 4puo C:1-429 [263571]
Other proteins in same PDB: d4puoa2, d4puoa3, d4puob_, d4puoc2, d4puoc3, d4puod_
automated match to d2ykna1
protein/DNA complex; protein/RNA complex; complexed with nvp

Domains for 4pwd:

Domain d4pwda1: 4pwd A:1-429 [263579]
Other proteins in same PDB: d4pwda2, d4pwda3, d4pwdb_, d4pwdc2, d4pwdc3, d4pwdd_
automated match to d2ykna1
protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4

Domain d4pwdc1: 4pwd C:1-429 [263581]
Other proteins in same PDB: d4pwda2, d4pwda3, d4pwdb_, d4pwdc2, d4pwdc3, d4pwdd_
automated match to d2ykna1
protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4

Domain for 4rw4:
- Domain d4rw4a1: 4rw4 A:1-429 [271954]
  Other proteins in same PDB: d4rw4a2, d4rw4a3, d4rw4b_
  automated match to d2ykna1
  complexed with 494
Domain for 4rw6:
- Domain d4rw6a1: 4rw6 A:1-429 [271957]
  Other proteins in same PDB: d4rw6a2, d4rw6a3, d4rw6b_
  automated match to d2ykna1
  complexed with 494
Domain for 4rw7:
- Domain d4rw7a1: 4rw7 A:1-429 [271959]
  Other proteins in same PDB: d4rw7a2, d4rw7a3, d4rw7b_
  automated match to d2ykna1
  complexed with 3x6
Domain for 4rw8:
- Domain d4rw8a1: 4rw8 A:1-429 [271960]
  Other proteins in same PDB: d4rw8a2, d4rw8a3, d4rw8b_
  automated match to d2ykna1
  complexed with 3x6
Domain for 4rw9:
- Domain d4rw9a1: 4rw9 A:1-429 [271952]
  Other proteins in same PDB: d4rw9a2, d4rw9a3, d4rw9b_
  automated match to d2ykna1
  complexed with 3x6
Domain for 4we1:
- Domain d4we1a1: 4we1 A:2-429 [261467]
  Other proteins in same PDB: d4we1a2, d4we1b_
  automated match to d2ykna1
  complexed with 3lq, mg, so4
Domain for 5c24:
- Domain d5c24a1: 5c24 A:-1-429 [275361]
  Other proteins in same PDB: d5c24a2, d5c24b_
  automated match to d4puoa1
  complexed with 4xo, mg, so4

Human immunodeficiency virus type 1 group m subtype b (isolate bh10) [TaxId:11678] [311492] (3 PDB entries)
1. Domains for 5cym:
  1. Domain d5cyma1: 5cym A:1-429 [310357]
    Other proteins in same PDB: d5cyma2, d5cyma3
    automated match to d2be2a1
    complexed with dms, edo, iod, pyz, so4, t27
  2. Domain d5cymb_: 5cym B: [310360]
    Other proteins in same PDB: d5cyma2, d5cyma3
    automated match to d2hmib_
    complexed with dms, edo, iod, pyz, so4, t27
2. Domains for 5cyq:
  1. Domain d5cyqa1: 5cyq A:1-429 [310361]
    Other proteins in same PDB: d5cyqa2, d5cyqa3
    automated match to d2be2a1
    complexed with br, byz, dms, t27
  2. Domain d5cyqb_: 5cyq B: [310364]
    Other proteins in same PDB: d5cyqa2, d5cyqa3
    automated match to d2hmib_
    complexed with br, byz, dms, t27
3. Domain for 6ecl:
  - Domain d6ecla1: 6ecl A:-1-429 [373128]
    Other proteins in same PDB: d6ecla2, d6eclb_
    automated match to d2be2a1
    protein/RNA complex; complexed with mn, t90
Human immunodeficiency virus type 1 [TaxId:11676] [380243] (2 PDB entries)
1. Domain for 6ul5:
  - Domain d6ul5a1: 6ul5 A:-1-429 [380244]
    Other proteins in same PDB: d6ul5a2, d6ul5b_
    automated match to d2be2a1
    complexed with edo, mg, qag, so4
2. Domain for 7kwu:
  - Domain d7kwua1: 7kwu A:-1-429 [402175]
    Other proteins in same PDB: d7kwua2, d7kwub_
    automated match to d2be2a1
    complexed with edo, k7f, mg, so4
Human immunodeficiency virus type 1 [TaxId:11678] [226272] (13 PDB entries)
1. Domains for 3qlh:
  1. Domain d3qlha1: 3qlh A:1-429 [215286]
    Other proteins in same PDB: d3qlha2, d3qlha3
    automated match to d1eeta2
    complexed with dms, edo, mn, mnk, t27
  2. Domain d3qlhb_: 3qlh B: [215288]
    Other proteins in same PDB: d3qlha2, d3qlha3
    automated match to d1lweb_
    complexed with dms, edo, mn, mnk, t27
2. Domain for 4dg1:
  - Domain d4dg1a1: 4dg1 A:1-429 [219744]
    Other proteins in same PDB: d4dg1a2, d4dg1b_
    automated match to d1eeta2
    complexed with edo, gol, mg; mutant
3. Domains for 4h4m:
  1. Domain d4h4ma1: 4h4m A:1-429 [222381]
    Other proteins in same PDB: d4h4ma2
    automated match to d1bqna2
    complexed with 494, edo
  2. Domain d4h4mb_: 4h4m B: [222383]
    Other proteins in same PDB: d4h4ma2
    automated match to d1hqeb_
    complexed with 494, edo
4. Domain for 4h4o:
  - Domain d4h4ob_: 4h4o B: [222386]
    Other proteins in same PDB: d4h4oa2, d4h4oa3
    automated match to d1hqeb_
    complexed with 506
5. Domains for 4i7g:
  1. Domain d4i7ga1: 4i7g A:-1-429 [307535]
    Other proteins in same PDB: d4i7ga2
    automated match to d2be2a1
    protein/DNA complex; protein/RNA complex; complexed with 1cj, dms, t27
  2. Domain d4i7gb_: 4i7g B: [307537]
    Other proteins in same PDB: d4i7ga2
    automated match to d2hmib_
    protein/DNA complex; protein/RNA complex; complexed with 1cj, dms, t27
6. Domains for 4icl:
  1. Domain d4icla1: 4icl A:1-429 [223122]
    Other proteins in same PDB: d4icla2, d4icla3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with 14n, dms, mg, t27
  2. Domain d4iclb_: 4icl B: [223124]
    Other proteins in same PDB: d4icla2, d4icla3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with 14n, dms, mg, t27
7. Domains for 4id5:
  1. Domain d4id5a1: 4id5 A:1-429 [223125]
    Other proteins in same PDB: d4id5a2, d4id5a3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with 1ff, dms, mg, t27
  2. Domain d4id5b_: 4id5 B: [223127]
    Other proteins in same PDB: d4id5a2, d4id5a3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with 1ff, dms, mg, t27
8. Domains for 4idk:
  1. Domain d4idka1: 4idk A:1-429 [223128]
    Other proteins in same PDB: d4idka2, d4idka3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with 1fe, dms, mg, t27
  2. Domain d4idkb_: 4idk B: [223130]
    Other proteins in same PDB: d4idka2, d4idka3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with 1fe, dms, mg, t27
9. Domains for 4ifv:
  1. Domain d4ifva1: 4ifv A:1-429 [223149]
    Other proteins in same PDB: d4ifva2, d4ifva3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with dms, fmq, mg, t27
  2. Domain d4ifvb_: 4ifv B: [223151]
    Other proteins in same PDB: d4ifva2, d4ifva3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with dms, fmq, mg, t27
10. Domains for 4ify:
  1. Domain d4ifya1: 4ify A:1-429 [223152]
    Other proteins in same PDB: d4ifya2, d4ifya3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with 1fd, dms, mg, t27
  2. Domain d4ifyb_: 4ify B: [223154]
    Other proteins in same PDB: d4ifya2, d4ifya3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with 1fd, dms, mg, t27
11. Domains for 4ig0:
  1. Domain d4ig0a1: 4ig0 A:1-429 [223155]
    Other proteins in same PDB: d4ig0a2, d4ig0a3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with 1fg, dms
  2. Domain d4ig0b_: 4ig0 B: [223157]
    Other proteins in same PDB: d4ig0a2, d4ig0a3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with 1fg, dms
12. Domain for 4ig3:
  - Domain d4ig3a1: 4ig3 A:1-429 [223158]
    Other proteins in same PDB: d4ig3a2, d4ig3a3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with dms, j94, t27
13. Domains for 4kfb:
  1. Domain d4kfba1: 4kfb A:1-429 [224283]
    Other proteins in same PDB: d4kfba2, d4kfba3
    automated match to d1bqna2
    protein/DNA complex; protein/RNA complex; complexed with 1qp, dms, t27
  2. Domain d4kfbb_: 4kfb B: [224285]
    Other proteins in same PDB: d4kfba2, d4kfba3
    automated match to d1hqeb_
    protein/DNA complex; protein/RNA complex; complexed with 1qp, dms, t27
Moloney murine leukemia virus [TaxId:11801] [188900] (1 PDB entry)
- Domain for 3fsi:
  - Domain d3fsia_: 3fsi A: [176028]
    automated match to d1d0ea_
    protein/DNA complex; complexed with act, mwb

More info for Protein automated matches from e.8.1.2: Reverse transcriptase

Timeline for Protein automated matches from e.8.1.2: Reverse transcriptase:

Protein automated matches from e.8.1.2: Reverse transcriptase first appeared in SCOPe 2.01
Protein automated matches from e.8.1.2: Reverse transcriptase appears in SCOPe 2.06
Protein automated matches from e.8.1.2: Reverse transcriptase appears in the current release, SCOPe 2.08