Class e: Multi-domain proteins (alpha and beta) [56572] (69 folds) |
Fold e.8: DNA/RNA polymerases [56671] (1 superfamily) divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members |
Superfamily e.8.1: DNA/RNA polymerases [56672] (7 families) "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain |
Family e.8.1.2: Reverse transcriptase [56686] (3 proteins) |
Protein automated matches [190211] (6 species) not a true protein |
Hiv-1 m:b_hxb2r [TaxId:11706] [187165] (10 PDB entries) |
Domain d2ynfa1: 2ynf A:1-429 [207669] Other proteins in same PDB: d2ynfa2, d2ynfa3 automated match to d1bqna2 complexed with mg, tar, whu; mutant |
Domain d2ynfb_: 2ynf B: [207671] Other proteins in same PDB: d2ynfa2, d2ynfa3 automated match to d1hqeb_ complexed with mg, tar, whu; mutant |
Domain d2ynga1: 2yng A:1-429 [207672] Other proteins in same PDB: d2ynga2, d2ynga3 automated match to d1bqna2 complexed with mg, srt, whu |
Domain d2yngb_: 2yng B: [207674] Other proteins in same PDB: d2ynga2, d2ynga3 automated match to d1hqeb_ complexed with mg, srt, whu |
Domain d2ynha1: 2ynh A:1-429 [207675] Other proteins in same PDB: d2ynha2, d2ynha3 automated match to d1bqna2 complexed with eur, tar |
Domain d2ynhb_: 2ynh B: [207677] Other proteins in same PDB: d2ynha2, d2ynha3 automated match to d1hqeb_ complexed with eur, tar |
Domain d2ynia1: 2yni A:1-429 [207678] Other proteins in same PDB: d2ynia2, d2ynia3 automated match to d1bqna2 complexed with cxd, mg, tar |
Domain d2ynib_: 2yni B: [207680] Other proteins in same PDB: d2ynia2, d2ynia3 automated match to d1hqeb_ complexed with cxd, mg, tar |
Domain d3mecb_: 3mec B: [181026] Other proteins in same PDB: d3meca1, d3meca2 automated match to d1c1cb_ complexed with 65b, so4 |
Domain d3meda1: 3med A:1-429 [199831] Other proteins in same PDB: d3meda2 automated match to d1bqna2 complexed with 65b, cl, so4 |
Domain d3medb_: 3med B: [181027] Other proteins in same PDB: d3meda2 automated match to d1c1cb_ complexed with 65b, cl, so4 |
Domain d3meeb_: 3mee B: [181028] Other proteins in same PDB: d3meea1, d3meea2 automated match to d1c1cb_ complexed with so4, t27 |
Domain d3mega1: 3meg A:1-429 [199835] Other proteins in same PDB: d3mega2 automated match to d1bqna2 complexed with so4, t27 |
Domain d3megb_: 3meg B: [181029] Other proteins in same PDB: d3mega2 automated match to d1c1cb_ complexed with so4, t27 |
Domain d3tama1: 3tam A:3-429 [200790] Other proteins in same PDB: d3tama2, d3tama3 automated match to d1bqna2 complexed with m06; mutant |
Domain d3tamb_: 3tam B: [185741] Other proteins in same PDB: d3tama2, d3tama3 automated match to d1c1cb_ complexed with m06; mutant |
Domain d4kv8a1: 4kv8 A:1-429 [224481] Other proteins in same PDB: d4kv8a2 automated match to d1bqna2 complexed with 1wt, mla, suc |
Domain d4kv8b_: 4kv8 B: [224483] Other proteins in same PDB: d4kv8a2 automated match to d2opsa1 complexed with 1wt, mla, suc |
Human immunodeficiency virus 1 [TaxId:11676] [186967] (7 PDB entries) |
Domain d2banb_: 2ban B: [128241] Other proteins in same PDB: d2bana1, d2bana2 automated match to d1bqmb_ complexed with 357, mn |
Domain d2jlea1: 2jle A:1-429 [205111] Other proteins in same PDB: d2jlea2 automated match to d1bqna2 complexed with i15 |
Domain d2jleb_: 2jle B: [230920] Other proteins in same PDB: d2jlea2 automated match to d2jlea1 complexed with i15 |
Domain d2vg5a1: 2vg5 A:1-429 [198437] Other proteins in same PDB: d2vg5a2, d2vg5b_ automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with nnc |
Domain d2vg6a1: 2vg6 A:1-429 [238889] Other proteins in same PDB: d2vg6a2 automated match to d2ykna1 protein/DNA complex; protein/RNA complex; complexed with nnb |
Domain d2vg6b_: 2vg6 B: [153032] Other proteins in same PDB: d2vg6a2 automated match to d3is9b_ protein/DNA complex; protein/RNA complex; complexed with nnb |
Domain d2vg7a1: 2vg7 A:1-429 [198439] Other proteins in same PDB: d2vg7a2, d2vg7b_ automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with nni |
Domain d2wonb_: 2won B: [169528] Other proteins in same PDB: d2wona1, d2wona2 automated match to d1c1cb_ complexed with zze |
Domain d4zhra1: 4zhr A:1-429 [279397] Other proteins in same PDB: d4zhra2 automated match to d1bqna2 mutant |
Domain d4zhrb_: 4zhr B: [279396] Other proteins in same PDB: d4zhra2 automated match to d2hmib_ mutant |
Human immunodeficiency virus type 1 bh10 [TaxId:11678] [225820] (18 PDB entries) |
Domain d2ykma1: 2ykm A:1-429 [207657] Other proteins in same PDB: d2ykma2, d2ykma3 automated match to d1bqna2 complexed with ca, ykn |
Domain d2ykmb_: 2ykm B: [207659] Other proteins in same PDB: d2ykma2, d2ykma3 automated match to d1hqeb_ complexed with ca, ykn |
Domain d2ykna1: 2ykn A:1-429 [207660] Other proteins in same PDB: d2ykna2, d2ykna3 automated match to d1bqna2 complexed with ca, ykn |
Domain d2yknb_: 2ykn B: [207662] Other proteins in same PDB: d2ykna2, d2ykna3 automated match to d1hqeb_ complexed with ca, ykn |
Domain d3ig1a1: 3ig1 A:3-429 [211671] Other proteins in same PDB: d3ig1a2 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with jth, mn |
Domain d3ig1b_: 3ig1 B: [211673] Other proteins in same PDB: d3ig1a2 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with jth, mn |
Domain d4h4oa1: 4h4o A:1-429 [222384] Other proteins in same PDB: d4h4oa2, d4h4oa3 automated match to d1bqna2 complexed with 506 |
Domain d4ig3b_: 4ig3 B: [223160] Other proteins in same PDB: d4ig3a2, d4ig3a3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with dms, j94, t27 |
Domain d4lsna1: 4lsn A:1-429 [266696] Other proteins in same PDB: d4lsna2, d4lsna3, d4lsnb_ automated match to d2ykna1 complexed with 1yr |
Domain d4o44a1: 4o44 A:1-429 [257220] Other proteins in same PDB: d4o44a2, d4o44b_ automated match to d2ykna1 complexed with 2rs |
Domain d4o4ga1: 4o4g A:1-429 [260718] Other proteins in same PDB: d4o4ga2, d4o4ga3, d4o4gb_ automated match to d2ykna1 complexed with 2rt |
Domain d4pqua1: 4pqu A:1-429 [257524] Other proteins in same PDB: d4pqua2, d4pqub_, d4pquc2, d4pqud_ automated match to d2ykna1 protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4 |
Domain d4pquc1: 4pqu C:1-429 [258229] Other proteins in same PDB: d4pqua2, d4pqub_, d4pquc2, d4pqud_ automated match to d2ykna1 protein/DNA complex; protein/RNA complex; complexed with dtp, edo, gol, mg, so4 |
Domain d4puoa1: 4puo A:1-429 [263569] Other proteins in same PDB: d4puoa2, d4puoa3, d4puob_, d4puoc2, d4puoc3, d4puod_ automated match to d2ykna1 protein/DNA complex; protein/RNA complex; complexed with nvp |
Domain d4puoc1: 4puo C:1-429 [263571] Other proteins in same PDB: d4puoa2, d4puoa3, d4puob_, d4puoc2, d4puoc3, d4puod_ automated match to d2ykna1 protein/DNA complex; protein/RNA complex; complexed with nvp |
Domain d4pwda1: 4pwd A:1-429 [263579] Other proteins in same PDB: d4pwda2, d4pwda3, d4pwdb_, d4pwdc2, d4pwdc3, d4pwdd_ automated match to d2ykna1 protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4 |
Domain d4pwdc1: 4pwd C:1-429 [263581] Other proteins in same PDB: d4pwda2, d4pwda3, d4pwdb_, d4pwdc2, d4pwdc3, d4pwdd_ automated match to d2ykna1 protein/DNA complex; protein/RNA complex; complexed with ca, nvp, so4 |
Domain d4rw4a1: 4rw4 A:1-429 [271954] Other proteins in same PDB: d4rw4a2, d4rw4a3, d4rw4b_ automated match to d2ykna1 complexed with 494 |
Domain d4rw6a1: 4rw6 A:1-429 [271957] Other proteins in same PDB: d4rw6a2, d4rw6a3, d4rw6b_ automated match to d2ykna1 complexed with 494 |
Domain d4rw7a1: 4rw7 A:1-429 [271959] Other proteins in same PDB: d4rw7a2, d4rw7a3, d4rw7b_ automated match to d2ykna1 complexed with 3x6 |
Domain d4rw8a1: 4rw8 A:1-429 [271960] Other proteins in same PDB: d4rw8a2, d4rw8a3, d4rw8b_ automated match to d2ykna1 complexed with 3x6 |
Domain d4rw9a1: 4rw9 A:1-429 [271952] Other proteins in same PDB: d4rw9a2, d4rw9a3, d4rw9b_ automated match to d2ykna1 complexed with 3x6 |
Domain d4we1a1: 4we1 A:2-429 [261467] Other proteins in same PDB: d4we1a2, d4we1b_ automated match to d2ykna1 complexed with 3lq, mg, so4 |
Domain d5c24a1: 5c24 A:-1-429 [275361] Other proteins in same PDB: d5c24a2, d5c24b_ automated match to d4puoa1 complexed with 4xo, mg, so4 |
Human immunodeficiency virus type 1 group m subtype b (isolate bh10) [TaxId:11678] [311492] (2 PDB entries) |
Domain d5cyma1: 5cym A:1-429 [310357] Other proteins in same PDB: d5cyma2, d5cyma3 automated match to d2be2a1 complexed with dms, edo, iod, pyz, so4, t27 |
Domain d5cymb_: 5cym B: [310360] Other proteins in same PDB: d5cyma2, d5cyma3 automated match to d2hmib_ complexed with dms, edo, iod, pyz, so4, t27 |
Domain d5cyqa1: 5cyq A:1-429 [310361] Other proteins in same PDB: d5cyqa2, d5cyqa3 automated match to d2be2a1 complexed with br, byz, dms, t27 |
Domain d5cyqb_: 5cyq B: [310364] Other proteins in same PDB: d5cyqa2, d5cyqa3 automated match to d2hmib_ complexed with br, byz, dms, t27 |
Human immunodeficiency virus type 1 [TaxId:11678] [226272] (13 PDB entries) |
Domain d3qlha1: 3qlh A:1-429 [215286] Other proteins in same PDB: d3qlha2, d3qlha3 automated match to d1eeta2 complexed with dms, edo, mn, mnk, t27 |
Domain d3qlhb_: 3qlh B: [215288] Other proteins in same PDB: d3qlha2, d3qlha3 automated match to d1lweb_ complexed with dms, edo, mn, mnk, t27 |
Domain d4dg1a1: 4dg1 A:1-429 [219744] Other proteins in same PDB: d4dg1a2, d4dg1b_ automated match to d1eeta2 complexed with edo, gol, mg; mutant |
Domain d4h4ma1: 4h4m A:1-429 [222381] Other proteins in same PDB: d4h4ma2 automated match to d1bqna2 complexed with 494, edo |
Domain d4h4mb_: 4h4m B: [222383] Other proteins in same PDB: d4h4ma2 automated match to d1hqeb_ complexed with 494, edo |
Domain d4h4ob_: 4h4o B: [222386] Other proteins in same PDB: d4h4oa2, d4h4oa3 automated match to d1hqeb_ complexed with 506 |
Domain d4i7ga1: 4i7g A:-1-429 [307535] Other proteins in same PDB: d4i7ga2 automated match to d2be2a1 protein/DNA complex; protein/RNA complex; complexed with 1cj, dms, t27 |
Domain d4i7gb_: 4i7g B: [307537] Other proteins in same PDB: d4i7ga2 automated match to d2hmib_ protein/DNA complex; protein/RNA complex; complexed with 1cj, dms, t27 |
Domain d4icla1: 4icl A:1-429 [223122] Other proteins in same PDB: d4icla2, d4icla3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with 14n, dms, mg, t27 |
Domain d4iclb_: 4icl B: [223124] Other proteins in same PDB: d4icla2, d4icla3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with 14n, dms, mg, t27 |
Domain d4id5a1: 4id5 A:1-429 [223125] Other proteins in same PDB: d4id5a2, d4id5a3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with 1ff, dms, mg, t27 |
Domain d4id5b_: 4id5 B: [223127] Other proteins in same PDB: d4id5a2, d4id5a3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with 1ff, dms, mg, t27 |
Domain d4idka1: 4idk A:1-429 [223128] Other proteins in same PDB: d4idka2, d4idka3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with 1fe, dms, mg, t27 |
Domain d4idkb_: 4idk B: [223130] Other proteins in same PDB: d4idka2, d4idka3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with 1fe, dms, mg, t27 |
Domain d4ifva1: 4ifv A:1-429 [223149] Other proteins in same PDB: d4ifva2, d4ifva3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with dms, fmq, mg, t27 |
Domain d4ifvb_: 4ifv B: [223151] Other proteins in same PDB: d4ifva2, d4ifva3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with dms, fmq, mg, t27 |
Domain d4ifya1: 4ify A:1-429 [223152] Other proteins in same PDB: d4ifya2, d4ifya3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with 1fd, dms, mg, t27 |
Domain d4ifyb_: 4ify B: [223154] Other proteins in same PDB: d4ifya2, d4ifya3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with 1fd, dms, mg, t27 |
Domain d4ig0a1: 4ig0 A:1-429 [223155] Other proteins in same PDB: d4ig0a2, d4ig0a3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with 1fg, dms |
Domain d4ig0b_: 4ig0 B: [223157] Other proteins in same PDB: d4ig0a2, d4ig0a3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with 1fg, dms |
Domain d4ig3a1: 4ig3 A:1-429 [223158] Other proteins in same PDB: d4ig3a2, d4ig3a3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with dms, j94, t27 |
Domain d4kfba1: 4kfb A:1-429 [224283] Other proteins in same PDB: d4kfba2, d4kfba3 automated match to d1bqna2 protein/DNA complex; protein/RNA complex; complexed with 1qp, dms, t27 |
Domain d4kfbb_: 4kfb B: [224285] Other proteins in same PDB: d4kfba2, d4kfba3 automated match to d1hqeb_ protein/DNA complex; protein/RNA complex; complexed with 1qp, dms, t27 |
Moloney murine leukemia virus [TaxId:11801] [188900] (1 PDB entry) |
Domain d3fsia_: 3fsi A: [176028] automated match to d1d0ea_ protein/DNA complex; complexed with act, mwb |
Timeline for Protein automated matches from e.8.1.2: Reverse transcriptase: