SCOPe 2.07: Domain d4ifvb_: 4ifv B:

Lineage for d4ifvb_ (4ifv B:)

1. Root: SCOPe 2.07

2. Class e: Multi-domain proteins (alpha and beta) [56572] (71 folds)

3. Fold e.8: DNA/RNA polymerases [56671] (1 superfamily)
   divided into morphological domains including "palm", "thumb" and "fingers"; the catalytic "palm" domain is conserved to all members

4. Superfamily e.8.1: DNA/RNA polymerases [56672] (8 families)
   "palm" domain has a ferredoxin-like fold, related to that of an adenylyl cyclase domain

5. Family e.8.1.2: Reverse transcriptase [56686] (3 proteins)

6. Protein automated matches [190211] (7 species)
   not a true protein

7. Species Human immunodeficiency virus type 1 [TaxId:11678] [226272] (13 PDB entries)

8. Domain d4ifvb_: 4ifv B: [223151]
   Other proteins in same PDB: d4ifva2, d4ifva3
   automated match to d1hqeb_
   protein/DNA complex; protein/RNA complex; complexed with dms, fmq, mg, t27

Details for d4ifvb_

PDB Entry: 4ifv, 2.05 Å

PDB Description: detecting allosteric sites of hiv-1 reverse transcriptase by x-ray crystallographic fragment screening

PDB Compounds: (B:) Gag-Pol polyprotein

SCOPe Domain Sequences for d4ifvb_:

Sequence, based on SEQRES records:

>d4ifvb_ e.8.1.2 (B:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11678]}
ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaik
kkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedf
rkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqym
ddlyvgsdleigqhrtkieelrqhllrwglttpdkkhqkeppflwmgyelhpdkwtvqpi
vlpekdswtvndiqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelela
enreilkepvhgvyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtnd
vkqlteavqkittesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvk
lwyq

Sequence, based on observed residues (ATOM records):

>d4ifvb_ e.8.1.2 (B:) automated matches {Human immunodeficiency virus type 1 [TaxId: 11678]}
ietvpvklkpgmdgpkvkqwplteekikalveictemekegkiskigpenpyntpvfaik
kkdstkwrklvdfrelnkrtqdfwevqlgiphpaglkkkksvtvldvgdayfsvpldedf
rkytaftipsinnetpgiryqynvlpqgwkgspaifqssmtkilepfkkqnpdiviyqym
ddlyvgsdleigqhrtkieelrqhllrwglflwmgyelhpdkwtvqpivlpekdswtvnd
iqklvgklnwasqiypgikvrqlskllrgtkalteviplteeaelelaenreilkepvhg
vyydpskdliaeiqkqgqgqwtyqiyqepfknlktgkyarmrgahtndvkqlteavqkit
tesiviwgktpkfklpiqketwetwwteywqatwipewefvntpplvklwyq

Timeline for d4ifvb_:

• d4ifvb_ first appeared in SCOPe 2.03
  
• d4ifvb_ appears in SCOPe 2.06
  
• d4ifvb_ appears in the current release, SCOPe 2.08