SCOPe 2.08: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.08
Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
Fold c.92: Chelatase-like [53799] (3 superfamilies)
duplication: tandem repeat of two domains; 3 layers (a/b/a); parallel beta-sheet of 4 strands, order 2134
Superfamily c.92.2: 'Helical backbone' metal receptor [53807] (5 families)
contains a long alpha helical insertion in the interdomain linker

Family c.92.2.3: Nitrogenase iron-molybdenum protein [53816] (3 proteins)
contains three domains of this fold; "Helical backbone" holds domains 2 and 3
both chains are homologous; the inter-chain arrangement of domains 1 is similar to the intra-chain arrangement of domains 2 and 3
automatically mapped to Pfam PF00148

Protein automated matches [190199] (4 species)
not a true protein

Species:

Azotobacter vinelandii [TaxId:354] [186943] (14 PDB entries)

Domains for 2afh:
1. Domain d2afha_: 2afh A: [126679]
  Other proteins in same PDB: d2afhb_, d2afhd_, d2afhe_, d2afhf_
  automated match to d1h1la_
  complexed with 1pe, ca, cfn, clf, hca, na, p6g, peg, pg4, pge, sf4, trs
2. Domain d2afhc_: 2afh C: [126681]
  Other proteins in same PDB: d2afhb_, d2afhd_, d2afhe_, d2afhf_
  automated match to d1h1la_
  complexed with 1pe, ca, cfn, clf, hca, na, p6g, peg, pg4, pge, sf4, trs

Domains for 2afi:

Domain d2afia_: 2afi A: [126685]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1m34a_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domain d2afib_: 2afi B: [126686]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1qh8b_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domain d2afic_: 2afi C: [126687]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1m34a_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domain d2afid_: 2afi D: [126688]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1qh8b_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domain d2afii_: 2afi I: [126689]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1m34a_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domain d2afij_: 2afi J: [126690]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1qh8b_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domain d2afik_: 2afi K: [126691]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1m34a_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domain d2afil_: 2afi L: [126692]
Other proteins in same PDB: d2afie_, d2afif_, d2afig_, d2afih_, d2afim_, d2afin_, d2afio_, d2afip_
automated match to d1qh8b_
complexed with adp, ca, cfn, clf, hca, mg, sf4

Domains for 2afk:
1. Domain d2afka_: 2afk A: [126694]
  Other proteins in same PDB: d2afkb_, d2afkd_, d2afke_, d2afkf_, d2afkg_, d2afkh_
  automated match to d1h1la_
  complexed with acp, ca, cfn, clf, hca, mg, sf4
2. Domain d2afkc_: 2afk C: [126696]
  Other proteins in same PDB: d2afkb_, d2afkd_, d2afke_, d2afkf_, d2afkg_, d2afkh_
  automated match to d1h1la_
  complexed with acp, ca, cfn, clf, hca, mg, sf4
Domains for 3k1a:
1. Domain d3k1aa_: 3k1a A: [178943]
  Other proteins in same PDB: d3k1ab_, d3k1ad_
  automated match to d1h1la_
  complexed with ca, cfn, clf, hca
2. Domain d3k1ac_: 3k1a C: [178945]
  Other proteins in same PDB: d3k1ab_, d3k1ad_
  automated match to d1h1la_
  complexed with ca, cfn, clf, hca
Domains for 3u7q:
1. Domain d3u7qa_: 3u7q A: [186099]
  Other proteins in same PDB: d3u7qb_, d3u7qd_
  automated match to d1h1la_
  complexed with 1cl, ca, clf, hca, ics, imd, mg
2. Domain d3u7qc_: 3u7q C: [186101]
  Other proteins in same PDB: d3u7qb_, d3u7qd_
  automated match to d1h1la_
  complexed with 1cl, ca, clf, hca, ics, imd, mg
Domains for 4nd8:
1. Domain d4nd8a_: 4nd8 A: [236074]
  Other proteins in same PDB: d4nd8b_, d4nd8d_
  automated match to d1m34a_
  complexed with 1cl, fe, hca, ics
2. Domain d4nd8c_: 4nd8 C: [236615]
  Other proteins in same PDB: d4nd8b_, d4nd8d_
  automated match to d4nd8a_
  complexed with 1cl, fe, hca, ics
Domains for 4tku:
1. Domain d4tkua_: 4tku A: [260022]
  Other proteins in same PDB: d4tkub_, d4tkud_
  automated match to d1m34a_
  complexed with cl, clf, fe2, hca, ics, imd
2. Domain d4tkuc_: 4tku C: [260439]
  Other proteins in same PDB: d4tkub_, d4tkud_
  automated match to d1m34a_
  complexed with cl, clf, fe2, hca, ics, imd
Domains for 4tkv:
1. Domain d4tkva_: 4tkv A: [263899]
  Other proteins in same PDB: d4tkvb_, d4tkvd_
  automated match to d1m34a_
  complexed with clf, cmo, fe2, hca, ice, imd
2. Domain d4tkvc_: 4tkv C: [263900]
  Other proteins in same PDB: d4tkvb_, d4tkvd_
  automated match to d1m34a_
  complexed with clf, cmo, fe2, hca, ice, imd
Domains for 4wza:
1. Domain d4wzaa_: 4wza A: [269126]
  Other proteins in same PDB: d4wzab_, d4wzad_, d4wzae_, d4wzaf_, d4wzag_, d4wzah_
  automated match to d4tkua_
  complexed with acp, adp, clf, fe, hca, ics, mg, sf4
2. Domain d4wzac_: 4wza C: [269134]
  Other proteins in same PDB: d4wzab_, d4wzad_, d4wzae_, d4wzaf_, d4wzag_, d4wzah_
  automated match to d4tkua_
  complexed with acp, adp, clf, fe, hca, ics, mg, sf4
Domains for 4wzb:
1. Domain d4wzba_: 4wzb A: [269534]
  Other proteins in same PDB: d4wzbb_, d4wzbd_, d4wzbe_, d4wzbf_, d4wzbg_, d4wzbh_
  automated match to d4tkua_
  complexed with acp, clf, fe2, hca, ics, mg, sf4
2. Domain d4wzbc_: 4wzb C: [269532]
  Other proteins in same PDB: d4wzbb_, d4wzbd_, d4wzbe_, d4wzbf_, d4wzbg_, d4wzbh_
  automated match to d4tkua_
  complexed with acp, clf, fe2, hca, ics, mg, sf4
Domains for 5bvg:
1. Domain d5bvga_: 5bvg A: [280113]
  automated match to d1m34a_
  complexed with cl, clf, fe2, hca, icg, imd, se
2. Domain d5bvgb_: 5bvg B: [280117]
  automated match to d1qh8b_
  complexed with cl, clf, fe2, hca, icg, imd, se
3. Domain d5bvgc_: 5bvg C: [280111]
  automated match to d1m34a_
  complexed with cl, clf, fe2, hca, icg, imd, se
4. Domain d5bvgd_: 5bvg D: [280110]
  automated match to d1qh8b_
  complexed with cl, clf, fe2, hca, icg, imd, se
Domains for 5bvh:
1. Domain d5bvha_: 5bvh A: [280112]
  automated match to d1m34a_
  complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
2. Domain d5bvhb_: 5bvh B: [280116]
  automated match to d1qh8b_
  complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
3. Domain d5bvhc_: 5bvh C: [280118]
  automated match to d1m34a_
  complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
4. Domain d5bvhd_: 5bvh D: [280115]
  automated match to d1qh8b_
  complexed with cl, clf, cmo, fe2, hca, ich, ics, imd
Domains for 5cx1:
1. Domain d5cx1a_: 5cx1 A: [277128]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
2. Domain d5cx1b_: 5cx1 B: [277124]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
3. Domain d5cx1c_: 5cx1 C: [277127]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
4. Domain d5cx1d_: 5cx1 D: [277122]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
5. Domain d5cx1e_: 5cx1 E: [277126]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
6. Domain d5cx1f_: 5cx1 F: [277120]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
7. Domain d5cx1g_: 5cx1 G: [277117]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
8. Domain d5cx1h_: 5cx1 H: [277121]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
9. Domain d5cx1i_: 5cx1 I: [277116]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
10. Domain d5cx1j_: 5cx1 J: [277129]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
11. Domain d5cx1k_: 5cx1 K: [277119]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
12. Domain d5cx1l_: 5cx1 L: [277115]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
13. Domain d5cx1m_: 5cx1 M: [277125]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
14. Domain d5cx1n_: 5cx1 N: [277123]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
15. Domain d5cx1o_: 5cx1 O: [277130]
  automated match to d1qh8a_
  complexed with ca, clf, hca, ics; mutant
16. Domain d5cx1p_: 5cx1 P: [277118]
  automated match to d1qh8b_
  complexed with ca, clf, hca, ics; mutant
Domains for 6bbl:
1. Domain d6bbla_: 6bbl A: [349499]
  Other proteins in same PDB: d6bblb_, d6bbld_
  automated match to d4xpia_
  complexed with 1cl, c2h, fe, hca, ics, imd, mg
2. Domain d6bblc_: 6bbl C: [349588]
  Other proteins in same PDB: d6bblb_, d6bbld_
  automated match to d4xpia_
  complexed with 1cl, c2h, fe, hca, ics, imd, mg

Clostridium pasteurianum [TaxId:1262449] [269442] (1 PDB entry)
- Domains for 4wes:
  1. Domain d4wesa_: 4wes A: [269443]
    Other proteins in same PDB: d4wesb_, d4wesd_
    automated match to d1mioa_
    complexed with clf, fe2, hca, ics, mpd
  2. Domain d4wesc_: 4wes C: [269444]
    Other proteins in same PDB: d4wesb_, d4wesd_
    automated match to d1mioa_
    complexed with clf, fe2, hca, ics, mpd
Gluconacetobacter diazotrophicus [TaxId:272568] [322657] (2 PDB entries)
1. Domains for 5koh:
  1. Domain d5koha_: 5koh A: [323021]
    Other proteins in same PDB: d5kohb_, d5kohd_
    automated match to d1fp4a_
    complexed with clf, fe, hca, ics, mpd, mrd
  2. Domain d5kohc_: 5koh C: [323005]
    Other proteins in same PDB: d5kohb_, d5kohd_
    automated match to d1fp4a_
    complexed with clf, fe, hca, ics, mpd, mrd
2. Domains for 5koj:
  1. Domain d5koja_: 5koj A: [322658]
    Other proteins in same PDB: d5kojb_, d5kojd_
    automated match to d1fp4a_
    complexed with clf, fe, hca, ics
  2. Domain d5kojc_: 5koj C: [322688]
    Other proteins in same PDB: d5kojb_, d5kojd_
    automated match to d1fp4a_
    complexed with clf, fe, hca, ics
Azotobacter vinelandii [TaxId:322710] [423065] (1 PDB entry)
- Domains for 8dpn:
  1. Domain d8dpnc_: 8dpn C: [423066]
    Other proteins in same PDB: d8dpnb_, d8dpnd_
    automated match to d6o7mc_
    complexed with clf, fe, hca, ics
  2. Domain d8dpna_: 8dpn A: [423169]
    Other proteins in same PDB: d8dpnb_, d8dpnd_
    automated match to d6o7mc_
    complexed with clf, fe, hca, ics

More info for Protein automated matches from c.92.2.3: Nitrogenase iron-molybdenum protein

Timeline for Protein automated matches from c.92.2.3: Nitrogenase iron-molybdenum protein:

Protein automated matches from c.92.2.3: Nitrogenase iron-molybdenum protein first appeared in SCOPe 2.01
Protein automated matches from c.92.2.3: Nitrogenase iron-molybdenum protein appears in SCOPe 2.07