SCOPe 2.08: Protein: Ribonuclease PH, domain 1

Lineage for Protein: Ribonuclease PH, domain 1

Root: SCOPe 2.08
Class d: Alpha and beta proteins (a+b) [53931] (396 folds)
Fold d.14: Ribosomal protein S5 domain 2-like [54210] (1 superfamily)
core: beta(3)-alpha-beta-alpha; 2 layers: alpha/beta; left-handed crossover
Superfamily d.14.1: Ribosomal protein S5 domain 2-like [54211] (13 families)
Family d.14.1.4: Ribonuclease PH domain 1-like [54229] (11 proteins)
Protein Ribonuclease PH, domain 1 [102758] (4 species)

Species:

Aquifex aeolicus [TaxId:63363] [102759] (4 PDB entries)
1. Domain for 1udn:
  - Domain d1udna1: 1udn A:2-150 [99213]
    Other proteins in same PDB: d1udna2
    complexed with po4, so4
2. Domain for 1udo:
  - Domain d1udoa1: 1udo A:2-150 [99215]
    Other proteins in same PDB: d1udoa2
    complexed with po4, so4; mutant
3. Domain for 1udq:
  - Domain d1udqa1: 1udq A:2-150 [99217]
    Other proteins in same PDB: d1udqa2
    complexed with po4, so4; mutant
4. Domain for 1uds:
  - Domain d1udsa1: 1uds A:2-150 [99219]
    Other proteins in same PDB: d1udsa2
    complexed with po4, so4; mutant
Bacillus anthracis [225599] (1 PDB entry)
- Domain for 3dd6:
  - Domain d3dd6a1: 3dd6 A:1-151 [209093]
    Other proteins in same PDB: d3dd6a2
    automated match to d1oypa1
    complexed with so4
Bacillus subtilis [TaxId:1423] [102761] (3 PDB entries)
1. Domains for 1oyp:
  1. Domain d1oypa1: 1oyp A:1-151 [93734]
    Other proteins in same PDB: d1oypa2, d1oypb2, d1oypc2, d1oypd2, d1oype2, d1oypf2
    complexed with so4
  2. Domain d1oypb1: 1oyp B:1-151 [93736]
    Other proteins in same PDB: d1oypa2, d1oypb2, d1oypc2, d1oypd2, d1oype2, d1oypf2
    complexed with so4
  3. Domain d1oypc1: 1oyp C:1-151 [93738]
    Other proteins in same PDB: d1oypa2, d1oypb2, d1oypc2, d1oypd2, d1oype2, d1oypf2
    complexed with so4
  4. Domain d1oypd1: 1oyp D:1-151 [93740]
    Other proteins in same PDB: d1oypa2, d1oypb2, d1oypc2, d1oypd2, d1oype2, d1oypf2
    complexed with so4
  5. Domain d1oype1: 1oyp E:1-151 [93742]
    Other proteins in same PDB: d1oypa2, d1oypb2, d1oypc2, d1oypd2, d1oype2, d1oypf2
    complexed with so4
  6. Domain d1oypf1: 1oyp F:1-151 [93744]
    Other proteins in same PDB: d1oypa2, d1oypb2, d1oypc2, d1oypd2, d1oype2, d1oypf2
    complexed with so4
2. Domains for 1oyr:
  1. Domain d1oyra1: 1oyr A:1-151 [93746]
    Other proteins in same PDB: d1oyra2, d1oyrb2, d1oyrc2, d1oyrd2, d1oyre2, d1oyrf2
    complexed with cd, so4
  2. Domain d1oyrb1: 1oyr B:1-151 [93748]
    Other proteins in same PDB: d1oyra2, d1oyrb2, d1oyrc2, d1oyrd2, d1oyre2, d1oyrf2
    complexed with cd, so4
  3. Domain d1oyrc1: 1oyr C:1-151 [93750]
    Other proteins in same PDB: d1oyra2, d1oyrb2, d1oyrc2, d1oyrd2, d1oyre2, d1oyrf2
    complexed with cd, so4
  4. Domain d1oyrd1: 1oyr D:1-151 [93752]
    Other proteins in same PDB: d1oyra2, d1oyrb2, d1oyrc2, d1oyrd2, d1oyre2, d1oyrf2
    complexed with cd, so4
  5. Domain d1oyre1: 1oyr E:1-151 [93754]
    Other proteins in same PDB: d1oyra2, d1oyrb2, d1oyrc2, d1oyrd2, d1oyre2, d1oyrf2
    complexed with cd, so4
  6. Domain d1oyrf1: 1oyr F:1-151 [93756]
    Other proteins in same PDB: d1oyra2, d1oyrb2, d1oyrc2, d1oyrd2, d1oyre2, d1oyrf2
    complexed with cd, so4
3. Domain for 1oys:
  - Domain d1oysa1: 1oys A:1-151 [93758]
    Other proteins in same PDB: d1oysa2
Pseudomonas aeruginosa [TaxId:287] [102760] (2 PDB entries)
1. Domain for 1r6l:
  - Domain d1r6la1: 1r6l A:1-151 [97153]
    Other proteins in same PDB: d1r6la2
    complexed with nhe, so4
2. Domain for 1r6m:
  - Domain d1r6ma1: 1r6m A:1-151 [97155]
    Other proteins in same PDB: d1r6ma2
    protein/RNA complex; complexed with po4

More info for Protein Ribonuclease PH, domain 1 from d.14.1.4: Ribonuclease PH domain 1-like

Timeline for Protein Ribonuclease PH, domain 1 from d.14.1.4: Ribonuclease PH domain 1-like:

Protein Ribonuclease PH, domain 1 from d.14.1.4: Ribonuclease PH domain 1-like first appeared in SCOP 1.67
Protein Ribonuclease PH, domain 1 from d.14.1.4: Ribonuclease PH domain 1-like appears in SCOPe 2.07