Lineage for Protein: Pleiotropic translational regulator Hfq

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2049048Fold b.38: Sm-like fold [50181] (5 superfamilies)
    core: barrel, open; n*=4, S*=8; meander; SH3-like topology
  4. 2049049Superfamily b.38.1: Sm-like ribonucleoproteins [50182] (7 families) (S)
  5. 2049341Family b.38.1.2: Pleiotropic translational regulator Hfq [74939] (2 protein domains)
    forms homohexameric ring structures
  6. 2049342Protein Pleiotropic translational regulator Hfq [74940] (3 species)

Species:

  1. 2049343Escherichia coli [TaxId:562] [89319] (1 PDB entry)
  2. 2049350Pseudomonas aeruginosa [TaxId:287] [141293] (11 PDB entries)
    Uniprot Q9HUM0 6-71
    1. Domains for 1u1s:
      1. 2049357Domain d1u1sa1: 1u1s A:6-71 [119451]
      2. 2049358Domain d1u1sb_: 1u1s B: [119452]
        automated match to d1hk9d_
      3. 2049359Domain d1u1sc_: 1u1s C: [119453]
        automated match to d1hk9d_
      4. 2049360Domain d1u1sd_: 1u1s D: [119454]
        automated match to d1hk9d_
      5. 2049361Domain d1u1se_: 1u1s E: [119455]
        automated match to d1hk9d_
      6. 2049362Domain d1u1sf_: 1u1s F: [119456]
        automated match to d1hk9d_
    2. Domains for 1u1t:
      1. 2049369Domain d1u1ta_: 1u1t A: [119457]
        automated match to d1hk9d_
      2. 2049370Domain d1u1tb_: 1u1t B: [119458]
        automated match to d1hk9d_
      3. 2049371Domain d1u1tc_: 1u1t C: [119459]
        automated match to d1hk9d_
      4. 2049372Domain d1u1td_: 1u1t D: [119460]
        automated match to d1hk9d_
      5. 2049373Domain d1u1te_: 1u1t E: [119461]
        automated match to d1hk9d_
      6. 2049374Domain d1u1tf_: 1u1t F: [119462]
        automated match to d1hk9d_
    3. Domains for 3inz:
      1. 2049351Domain d3inza_: 3inz A: [178468]
        automated match to d1u1sa1
        complexed with cd, cl, na
      2. 2049352Domain d3inzb_: 3inz B: [178469]
        automated match to d1u1sa1
        complexed with cd, cl, na
      3. 2049353Domain d3inzc_: 3inz C: [178470]
        automated match to d1u1sa1
        complexed with cd, cl, na
      4. 2049354Domain d3inzd_: 3inz D: [178471]
        automated match to d1u1sa1
        complexed with cd, cl, na
      5. 2049355Domain d3inze_: 3inz E: [178472]
        automated match to d1u1sa1
        complexed with cd, cl, na
      6. 2049356Domain d3inzf_: 3inz F: [178473]
        automated match to d1u1sa1
        complexed with cd, cl, na
    4. Domains for 3m4g:
      1. 2049394Domain d3m4ga_: 3m4g A: [180842]
        automated match to d1u1sa1
        complexed with zn
      2. 2049395Domain d3m4gb_: 3m4g B: [180843]
        automated match to d1u1sa1
        complexed with zn
      3. 2049396Domain d3m4gc_: 3m4g C: [180844]
        automated match to d1u1sa1
        complexed with zn
      4. 2049397Domain d3m4gd_: 3m4g D: [180845]
        automated match to d1u1sa1
        complexed with zn
      5. 2049398Domain d3m4ge_: 3m4g E: [180846]
        automated match to d1u1sa1
        complexed with zn
      6. 2049399Domain d3m4gf_: 3m4g F: [180847]
        automated match to d1u1sa1
        complexed with zn
      7. 2049400Domain d3m4gg_: 3m4g G: [180848]
        automated match to d1u1sa1
        complexed with zn
      8. 2049401Domain d3m4gh_: 3m4g H: [180849]
        automated match to d1u1sa1
        complexed with zn
      9. 2049402Domain d3m4gi_: 3m4g I: [180850]
        automated match to d1u1sa1
        complexed with zn
      10. 2049403Domain d3m4gj_: 3m4g J: [180851]
        automated match to d1u1sa1
        complexed with zn
      11. 2049404Domain d3m4gk_: 3m4g K: [180852]
        automated match to d1u1sa1
        complexed with zn
      12. 2049405Domain d3m4gl_: 3m4g L: [180853]
        automated match to d1u1sa1
        complexed with zn
    5. Domains for 3qui:
      1. 2049388Domain d3quia_: 3qui A: [200387]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      2. 2049389Domain d3quib_: 3qui B: [200388]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      3. 2049390Domain d3quic_: 3qui C: [200389]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      4. 2049391Domain d3quid_: 3qui D: [200390]
        automated match to d1u1sa1
        protein/RNA complex; complexed with ade, adp, anp, peg
      5. 2049392Domain d3quie_: 3qui E: [200391]
        automated match to d1u1te_
        protein/RNA complex; complexed with ade, adp, anp, peg
      6. 2049393Domain d3quif_: 3qui F: [196057]
        automated match to d3inzf_
        protein/RNA complex; complexed with ade, adp, anp, peg
    6. Domains for 4j5y:
      1. 2049382Domain d4j5ya_: 4j5y A: [223563]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      2. 2049383Domain d4j5yb_: 4j5y B: [223564]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      3. 2049384Domain d4j5yc_: 4j5y C: [223565]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      4. 2049385Domain d4j5yd_: 4j5y D: [223566]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      5. 2049386Domain d4j5ye_: 4j5y E: [223567]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
      6. 2049387Domain d4j5yf_: 4j5y F: [223568]
        automated match to d1u1te_
        protein/RNA complex; complexed with atp, na, peg
    7. Domains for 4j6w:
      1. 2049363Domain d4j6wa_: 4j6w A: [223598]
        automated match to d1u1te_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      2. 2049364Domain d4j6wb_: 4j6w B: [223599]
        automated match to d1u1sb_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      3. 2049365Domain d4j6wc_: 4j6w C: [223600]
        automated match to d1u1sb_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      4. 2049366Domain d4j6wd_: 4j6w D: [223601]
        automated match to d1u1sb_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      5. 2049367Domain d4j6we_: 4j6w E: [223602]
        automated match to d1u1se_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
      6. 2049368Domain d4j6wf_: 4j6w F: [223603]
        automated match to d1u1te_
        protein/RNA complex; complexed with c, cdp, cl, ctp, mg, na, p6g
    8. Domains for 4j6x:
      1. 2049406Domain d4j6xa_: 4j6x A: [223604]
        automated match to d1u1sa1
        protein/RNA complex; complexed with utp
      2. 2049407Domain d4j6xb_: 4j6x B: [223605]
        automated match to d1u1te_
        protein/RNA complex; complexed with utp
      3. 2049408Domain d4j6xc_: 4j6x C: [223606]
        automated match to d1u1sa1
        protein/RNA complex; complexed with utp
      4. 2049409Domain d4j6xd_: 4j6x D: [223607]
        automated match to d1u1sb_
        protein/RNA complex; complexed with utp
      5. 2049410Domain d4j6xe_: 4j6x E: [223608]
        automated match to d1u1te_
        protein/RNA complex; complexed with utp
      6. 2049411Domain d4j6xf_: 4j6x F: [223609]
        automated match to d1u1te_
        protein/RNA complex; complexed with utp
    9. Domains for 4j6y:
      1. 2049376Domain d4j6ya_: 4j6y A: [223610]
        automated match to d1u1sa1
        complexed with cd
      2. 2049377Domain d4j6yb_: 4j6y B: [223611]
        automated match to d1u1sb_
        complexed with cd
      3. 2049378Domain d4j6yc_: 4j6y C: [223612]
        automated match to d1u1te_
        complexed with cd
      4. 2049379Domain d4j6yd_: 4j6y D: [223613]
        automated match to d1u1sa1
        complexed with cd
      5. 2049380Domain d4j6ye_: 4j6y E: [223614]
        automated match to d1u1te_
        complexed with cd
      6. 2049381Domain d4j6yf_: 4j6y F: [223615]
        automated match to d1u1te_
        complexed with cd
    10. Domains for 4mmk:
      1. 2049412Domain d4mmka_: 4mmk A: [257945]
        automated match to d3quia_
        complexed with k, na, so4, zn
      2. 2049413Domain d4mmkb_: 4mmk B: [257946]
        automated match to d3quia_
        complexed with k, na, so4, zn
      3. 2049414Domain d4mmkc_: 4mmk C: [263039]
        automated match to d3quia_
        complexed with k, na, so4, zn
      4. 2049415Domain d4mmkd_: 4mmk D: [263040]
        automated match to d3quia_
        complexed with k, na, so4, zn
      5. 2049416Domain d4mmke_: 4mmk E: [263041]
        automated match to d3quia_
        complexed with k, na, so4, zn
      6. 2049417Domain d4mmkf_: 4mmk F: [263042]
        automated match to d3quia_
        complexed with k, na, so4, zn
      7. 2049418Domain d4mmkg_: 4mmk G: [263043]
        automated match to d3quia_
        complexed with k, na, so4, zn
      8. 2049419Domain d4mmkh_: 4mmk H: [263044]
        automated match to d3quia_
        complexed with k, na, so4, zn
      9. 2049420Domain d4mmki_: 4mmk I: [263045]
        automated match to d3quia_
        complexed with k, na, so4, zn
      10. 2049421Domain d4mmkj_: 4mmk J: [263046]
        automated match to d3quia_
        complexed with k, na, so4, zn
      11. 2049422Domain d4mmkk_: 4mmk K: [263047]
        automated match to d3quia_
        complexed with k, na, so4, zn
      12. 2049423Domain d4mmkl_: 4mmk L: [263048]
        automated match to d3quia_
        complexed with k, na, so4, zn
    11. Domain for 4mml:
  3. 2049424Staphylococcus aureus [TaxId:1280] [74941] (3 PDB entries)
    1. Domains for 1kq1:
      1. 2049425Domain d1kq1a_: 1kq1 A: [72848]
        complexed with acy
      2. 2049426Domain d1kq1b_: 1kq1 B: [72849]
        complexed with acy
      3. 2049427Domain d1kq1h_: 1kq1 H: [72850]
        complexed with acy
      4. 2049428Domain d1kq1i_: 1kq1 I: [72851]
        complexed with acy
      5. 2049429Domain d1kq1k_: 1kq1 K: [72852]
        complexed with acy
      6. 2049430Domain d1kq1m_: 1kq1 M: [72853]
        complexed with acy
      7. 2049431Domain d1kq1n_: 1kq1 N: [72854]
        complexed with acy
      8. 2049432Domain d1kq1r_: 1kq1 R: [72855]
        complexed with acy
      9. 2049433Domain d1kq1s_: 1kq1 S: [72856]
        complexed with acy
      10. 2049434Domain d1kq1t_: 1kq1 T: [72857]
        complexed with acy
      11. 2049435Domain d1kq1w_: 1kq1 W: [72858]
        complexed with acy
      12. 2049436Domain d1kq1y_: 1kq1 Y: [72859]
        complexed with acy
    2. Domains for 1kq2:
      1. 2049451Domain d1kq2a_: 1kq2 A: [72860]
        protein/RNA complex
      2. 2049452Domain d1kq2b_: 1kq2 B: [72861]
        protein/RNA complex
      3. 2049453Domain d1kq2h_: 1kq2 H: [72862]
        protein/RNA complex
      4. 2049454Domain d1kq2i_: 1kq2 I: [72863]
        protein/RNA complex
      5. 2049455Domain d1kq2k_: 1kq2 K: [72864]
        protein/RNA complex
      6. 2049456Domain d1kq2m_: 1kq2 M: [72865]
        protein/RNA complex
    3. Domains for 3qsu:
      1. 2049437Domain d3qsua_: 3qsu A: [197430]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      2. 2049438Domain d3qsub_: 3qsu B: [193522]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      3. 2049439Domain d3qsuc_: 3qsu C: [200375]
        automated match to d1kq1a_
        protein/RNA complex; complexed with zn
      4. 2049440Domain d3qsud_: 3qsu D: [200376]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      5. 2049441Domain d3qsue_: 3qsu E: [200377]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      6. 2049442Domain d3qsuf_: 3qsu F: [200378]
        automated match to d1kq1a_
        protein/RNA complex; complexed with zn
      7. 2049443Domain d3qsug_: 3qsu G: [200379]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      8. 2049444Domain d3qsuh_: 3qsu H: [200380]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      9. 2049445Domain d3qsui_: 3qsu I: [200381]
        automated match to d1kq1a_
        protein/RNA complex; complexed with zn
      10. 2049446Domain d3qsuj_: 3qsu J: [200382]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      11. 2049447Domain d3qsuk_: 3qsu K: [200383]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      12. 2049448Domain d3qsum_: 3qsu M: [200384]
        automated match to d1kq1h_
        protein/RNA complex; complexed with zn
      13. 2049449Domain d3qsun_: 3qsu N: [200385]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn
      14. 2049450Domain d3qsus_: 3qsu S: [200386]
        automated match to d1kq1b_
        protein/RNA complex; complexed with zn

More info for Protein Pleiotropic translational regulator Hfq from b.38.1.2: Pleiotropic translational regulator Hfq

Timeline for Protein Pleiotropic translational regulator Hfq from b.38.1.2: Pleiotropic translational regulator Hfq:

  • Protein Pleiotropic translational regulator Hfq from b.38.1.2: Pleiotropic translational regulator Hfq first appeared in SCOP 1.61
  • Protein Pleiotropic translational regulator Hfq from b.38.1.2: Pleiotropic translational regulator Hfq appears in SCOPe 2.05