![]() | Class b: All beta proteins [48724] (180 folds) |
![]() | Fold b.34: SH3-like barrel [50036] (21 superfamilies) barrel, partly opened; n*=4, S*=8; meander the last strand is interrupted by a turn of 3-10 helix |
![]() | Superfamily b.34.13: Chromo domain-like [54160] (4 families) ![]() SH3-like barrel is capped by a C-terminal helix |
![]() | Family b.34.13.2: Chromo domain [54165] (8 proteins) lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold |
![]() | Protein Heterochromatin protein 1, HP1 [54166] (4 species) duplication: consists of two homologous domains, N-terminal chromo domain and C-terminal chromo shadow domain |
![]() | Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId:4896] [54169] (1 PDB entry) |
![]() | Domain d1e0ba_: 1e0b A: [37476] C-terminal shadow chromo domain complexed with 1pg |
![]() | Domain d1e0bb_: 1e0b B: [37477] C-terminal shadow chromo domain complexed with 1pg |
![]() | Fruit fly (Drosophila melanogaster) [TaxId:7227] [75343] (3 PDB entries) Uniprot P05205 23-74 |
![]() | Domain d1knaa_: 1kna A: [72771] Chromo domain complexed with histone h3 tail containing dimethyllysine 9 |
![]() | Domain d1knea_: 1kne A: [72774] Chromo domain complexed with histone h3 tail containing trimethyllysine 9 |
![]() | Domain d1q3la_: 1q3l A: [111652] complexed with histone H3 tail containing monomethyllysine 9 (Uniprot P16106 5-10), chain P |
![]() | Human (Homo sapiens) [TaxId:9606] [187099] (3 PDB entries) |
![]() | Domain d2fmma_: 2fmm A: [133782] Other proteins in same PDB: d2fmme1, d2fmme2 automated match to d1s4za_ complexed with so4 |
![]() | Domain d2fmmb_: 2fmm B: [133783] Other proteins in same PDB: d2fmme1, d2fmme2 automated match to d1s4za_ complexed with so4 |
![]() | Domain d2fmmc_: 2fmm C: [133784] Other proteins in same PDB: d2fmme1, d2fmme2 automated match to d1s4za_ complexed with so4 |
![]() | Domain d2fmmd_: 2fmm D: [133785] Other proteins in same PDB: d2fmme1, d2fmme2 automated match to d1s4za_ complexed with so4 |
![]() | Domain d3f2ua1: 3f2u A:2-51 [209778] Other proteins in same PDB: d3f2ua2 automated match to d1q3la_ |
![]() | Domain d3q6sa_: 3q6s A: [184231] automated match to d1s4za_ |
![]() | Domain d3q6sb_: 3q6s B: [184232] automated match to d1s4za_ |
![]() | Domain d3q6sc_: 3q6s C: [184233] automated match to d1s4za_ |
![]() | Domain d3q6sd_: 3q6s D: [184234] automated match to d1s4za_ |
![]() | Mouse (Mus musculus), HP1 beta (MOD1, M31) [TaxId:10090] [54167] (4 PDB entries) |
![]() | Domain d1ap0a_: 1ap0 A: [37475] N-terminal chromo domain |
![]() | Domain d1dz1a1: 1dz1 A:104-171 [37473] Other proteins in same PDB: d1dz1a2, d1dz1b2 C-terminal shadow chromo domain |
![]() | Domain d1dz1b1: 1dz1 B:104-171 [37474] Other proteins in same PDB: d1dz1a2, d1dz1b2 C-terminal shadow chromo domain |
![]() | Domain d1guwa1: 1guw A:10-80 [70584] Other proteins in same PDB: d1guwa2 Chromo domain complexed with the lysine 9-methyl histone H3 N-terminal peptide |
![]() | Domain d1s4za1: 1s4z A:104-176 [98515] Other proteins in same PDB: d1s4za2, d1s4zb2 Chromo shadow domain complexed with pxvxl motif peptide of caf-1, chain C |
![]() | Domain d1s4zb1: 1s4z B:104-176 [98516] Other proteins in same PDB: d1s4za2, d1s4zb2 Chromo shadow domain complexed with pxvxl motif peptide of caf-1, chain C |
Timeline for Protein Heterochromatin protein 1, HP1 from b.34.13.2: Chromo domain: