Lineage for Species: Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]

  1. Root: SCOPe 2.06
  2. 2017114Class b: All beta proteins [48724] (177 folds)
  3. 2045654Fold b.34: SH3-like barrel [50036] (21 superfamilies)
    barrel, partly opened; n*=4, S*=8; meander
    the last strand is interrupted by a turn of 3-10 helix
  4. 2047511Superfamily b.34.13: Chromo domain-like [54160] (4 families) (S)
    SH3-like barrel is capped by a C-terminal helix
  5. 2047551Family b.34.13.2: Chromo domain [54165] (8 protein domains)
    lacks the SH3-like barrel first strand that can be complemented by bound peptide ligand; in shadow chromo domain the corresponding site is altered by insertion; similarity to the IL8-like fold
  6. 2047596Protein Heterochromatin protein 1, HP1 [54166] (4 species)
    duplication: consists of two homologous domains, N-terminal chromo domain and C-terminal chromo shadow domain
  7. 2047597Species Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId:4896] [54169] (1 PDB entry)

PDB entry in Species: Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]:

  • Domain(s) for 1e0b:
    1. 2047598Domain d1e0ba_: 1e0b A: [37476]
      C-terminal shadow chromo domain
      complexed with 1pg
    2. 2047599Domain d1e0bb_: 1e0b B: [37477]
      C-terminal shadow chromo domain
      complexed with 1pg

More info for Species Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId:4896] from b.34.13.2 Heterochromatin protein 1, HP1

Timeline for Species Fission yeast (Schizosaccharomyces pombe), SWI6 [TaxId:4896] from b.34.13.2 Heterochromatin protein 1, HP1: