Lineage for Protein: R1 subunit of ribonucleotide reductase, C-terminal domain

  1. Root: SCOPe 2.06
  2. 2078559Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 2097778Fold c.7: PFL-like glycyl radical enzymes [51997] (1 superfamily)
    contains: barrel, closed; n=10, S=10; accommodates a hairpin loop inside the barrel
  4. 2097779Superfamily c.7.1: PFL-like glycyl radical enzymes [51998] (6 families) (S)
    duplication: the N- and C-terminal halves have similar topologies
  5. 2097807Family c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain [52002] (1 protein)
    automatically mapped to Pfam PF02867
  6. 2097808Protein R1 subunit of ribonucleotide reductase, C-terminal domain [52003] (2 species)

Species:

  1. 2097809Escherichia coli [TaxId:562] [52004] (10 PDB entries)
    1. Domains for 1r1r:
      1. 2097814Domain d1r1ra2: 1r1r A:222-737 [30680]
        Other proteins in same PDB: d1r1ra1, d1r1rb1, d1r1rc1
        mutant
      2. 2097815Domain d1r1rb2: 1r1r B:222-737 [30681]
        Other proteins in same PDB: d1r1ra1, d1r1rb1, d1r1rc1
        mutant
      3. 2097816Domain d1r1rc2: 1r1r C:222-737 [30682]
        Other proteins in same PDB: d1r1ra1, d1r1rb1, d1r1rc1
        mutant
    2. Domain for 1rlr:
    3. Domains for 2r1r:
      1. 2097826Domain d2r1ra2: 2r1r A:222-737 [30695]
        Other proteins in same PDB: d2r1ra1, d2r1rb1, d2r1rc1
        complexed with ttp
      2. 2097827Domain d2r1rb2: 2r1r B:222-737 [30696]
        Other proteins in same PDB: d2r1ra1, d2r1rb1, d2r1rc1
        complexed with ttp
      3. 2097828Domain d2r1rc2: 2r1r C:222-737 [30697]
        Other proteins in same PDB: d2r1ra1, d2r1rb1, d2r1rc1
        complexed with ttp
    4. Domains for 2x1y:
      1. 2097810Domain d2x1ya2: 2x1y A:222-737 [304624]
        Other proteins in same PDB: d2x1ya1, d2x1yb1, d2x1yc1
        automated match to d2r1ra2
      2. 2097811Domain d2x1yb2: 2x1y B:222-737 [304626]
        Other proteins in same PDB: d2x1ya1, d2x1yb1, d2x1yc1
        automated match to d2r1ra2
      3. 2097812Domain d2x1yc2: 2x1y C:222-737 [304628]
        Other proteins in same PDB: d2x1ya1, d2x1yb1, d2x1yc1
        automated match to d2r1ra2
    5. Domains for 3r1r:
      1. 2097829Domain d3r1ra2: 3r1r A:222-737 [30692]
        Other proteins in same PDB: d3r1ra1, d3r1rb1, d3r1rc1
        complexed with atp
      2. 2097830Domain d3r1rb2: 3r1r B:222-737 [30693]
        Other proteins in same PDB: d3r1ra1, d3r1rb1, d3r1rc1
        complexed with atp
      3. 2097831Domain d3r1rc2: 3r1r C:222-737 [30694]
        Other proteins in same PDB: d3r1ra1, d3r1rb1, d3r1rc1
        complexed with atp
    6. Domains for 4r1r:
      1. 2097832Domain d4r1ra2: 4r1r A:222-737 [30698]
        Other proteins in same PDB: d4r1ra1, d4r1rb1, d4r1rc1
        complexed with gdp, ttp
      2. 2097833Domain d4r1rb2: 4r1r B:222-737 [30699]
        Other proteins in same PDB: d4r1ra1, d4r1rb1, d4r1rc1
        complexed with gdp, ttp
      3. 2097834Domain d4r1rc2: 4r1r C:222-737 [30700]
        Other proteins in same PDB: d4r1ra1, d4r1rb1, d4r1rc1
        complexed with gdp, ttp
    7. Domains for 5cns:
      1. 2269495Domain d5cnsa2: 5cns A:222-736 [312801]
        Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
        automated match to d2r1ra2
        complexed with cdp, dat, dtp, feo, mg
      2. 2269515Domain d5cnsc2: 5cns C:222-736 [312821]
        Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
        automated match to d2r1ra2
        complexed with cdp, dat, dtp, feo, mg
      3. 2269549Domain d5cnsb2: 5cns B:222-737 [312853]
        Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
        automated match to d2r1ra2
        complexed with cdp, dat, dtp, feo, mg
      4. 2269552Domain d5cnsd2: 5cns D:222-737 [312856]
        Other proteins in same PDB: d5cnsa1, d5cnsb1, d5cnsc1, d5cnsd1
        automated match to d2r1ra2
        complexed with cdp, dat, dtp, feo, mg
    8. Domains for 5r1r:
      1. 2097817Domain d5r1ra2: 5r1r A:222-738 [30683]
        Other proteins in same PDB: d5r1ra1, d5r1rb1, d5r1rc1
        mutant
      2. 2097818Domain d5r1rb2: 5r1r B:222-738 [30684]
        Other proteins in same PDB: d5r1ra1, d5r1rb1, d5r1rc1
        mutant
      3. 2097819Domain d5r1rc2: 5r1r C:222-738 [30685]
        Other proteins in same PDB: d5r1ra1, d5r1rb1, d5r1rc1
        mutant
    9. Domains for 6r1r:
      1. 2097820Domain d6r1ra2: 6r1r A:222-738 [30686]
        Other proteins in same PDB: d6r1ra1, d6r1rb1, d6r1rc1
        mutant
      2. 2097821Domain d6r1rb2: 6r1r B:222-738 [30687]
        Other proteins in same PDB: d6r1ra1, d6r1rb1, d6r1rc1
        mutant
      3. 2097822Domain d6r1rc2: 6r1r C:222-738 [30688]
        Other proteins in same PDB: d6r1ra1, d6r1rb1, d6r1rc1
        mutant
    10. Domains for 7r1r:
      1. 2097823Domain d7r1ra2: 7r1r A:222-738 [30689]
        Other proteins in same PDB: d7r1ra1, d7r1rb1, d7r1rc1
        mutant
      2. 2097824Domain d7r1rb2: 7r1r B:222-738 [30690]
        Other proteins in same PDB: d7r1ra1, d7r1rb1, d7r1rc1
        mutant
      3. 2097825Domain d7r1rc2: 7r1r C:222-738 [30691]
        Other proteins in same PDB: d7r1ra1, d7r1rb1, d7r1rc1
        mutant
  2. 2097835Salmonella typhimurium [TaxId:90371] [110447] (5 PDB entries)
    Uniprot Q08698
    1. Domain for 1pem:
    2. Domain for 1peo:
    3. Domain for 1peq:
    4. Domain for 1peu:
    5. Domains for 2bq1:
      1. 2097840Domain d2bq1e2: 2bq1 E:175-699 [128954]
        Other proteins in same PDB: d2bq1e1, d2bq1f1, d2bq1i1, d2bq1j1
        automatically matched to d1pema2
        protein/DNA complex; complexed with dgt, fe, mg
      2. 2097841Domain d2bq1f2: 2bq1 F:175-699 [128956]
        Other proteins in same PDB: d2bq1e1, d2bq1f1, d2bq1i1, d2bq1j1
        automatically matched to d1pema2
        protein/DNA complex; complexed with dgt, fe, mg

More info for Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain

Timeline for Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain:

  • Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain first appeared (with stable ids) in SCOP 1.55
  • Protein R1 subunit of ribonucleotide reductase, C-terminal domain from c.7.1.2: R1 subunit of ribonucleotide reductase, C-terminal domain appears in SCOPe 2.05