SCOPe 2.08: Protein: Trp RNA-binding attenuation protein (TRAP)

Lineage for Protein: Trp RNA-binding attenuation protein (TRAP)

Root: SCOPe 2.08
Class b: All beta proteins [48724] (180 folds)

Fold b.82: Double-stranded beta-helix [51181] (7 superfamilies)
one turn of helix is made by two pairs of antiparallel strands linked with short turns
has appearance of a sandwich of distinct architecture and jelly-roll topology

Superfamily b.82.5: TRAP-like [51219] (2 families)
shorter variant of double-helix; assembles in large ring-like structures containing from 9 to 11 domains
Family b.82.5.1: Trp RNA-binding attenuation protein (TRAP) [51220] (2 proteins)
oligomeric ring consists of 11 single-domain subunits
automatically mapped to Pfam PF02081
Protein Trp RNA-binding attenuation protein (TRAP) [51221] (2 species)

Species:

Bacillus stearothermophilus [TaxId:1422] [51223] (11 PDB entries)
1. Domains for 1c9s:
  1. Domain d1c9sa_: 1c9s A: [28175]
    protein/RNA complex; complexed with trp
  2. Domain d1c9sb_: 1c9s B: [28176]
    protein/RNA complex; complexed with trp
  3. Domain d1c9sc_: 1c9s C: [28177]
    protein/RNA complex; complexed with trp
  4. Domain d1c9sd_: 1c9s D: [28178]
    protein/RNA complex; complexed with trp
  5. Domain d1c9se_: 1c9s E: [28179]
    protein/RNA complex; complexed with trp
  6. Domain d1c9sf_: 1c9s F: [28180]
    protein/RNA complex; complexed with trp
  7. Domain d1c9sg_: 1c9s G: [28181]
    protein/RNA complex; complexed with trp
  8. Domain d1c9sh_: 1c9s H: [28182]
    protein/RNA complex; complexed with trp
  9. Domain d1c9si_: 1c9s I: [28183]
    protein/RNA complex; complexed with trp
  10. Domain d1c9sj_: 1c9s J: [28184]
    protein/RNA complex; complexed with trp
  11. Domain d1c9sk_: 1c9s K: [28185]
    protein/RNA complex; complexed with trp
  12. Domain d1c9sl_: 1c9s L: [28186]
    protein/RNA complex; complexed with trp
  13. Domain d1c9sm_: 1c9s M: [28187]
    protein/RNA complex; complexed with trp
  14. Domain d1c9sn_: 1c9s N: [28188]
    protein/RNA complex; complexed with trp
  15. Domain d1c9so_: 1c9s O: [28189]
    protein/RNA complex; complexed with trp
  16. Domain d1c9sp_: 1c9s P: [28190]
    protein/RNA complex; complexed with trp
  17. Domain d1c9sq_: 1c9s Q: [28191]
    protein/RNA complex; complexed with trp
  18. Domain d1c9sr_: 1c9s R: [28192]
    protein/RNA complex; complexed with trp
  19. Domain d1c9ss_: 1c9s S: [28193]
    protein/RNA complex; complexed with trp
  20. Domain d1c9st_: 1c9s T: [28194]
    protein/RNA complex; complexed with trp
  21. Domain d1c9su_: 1c9s U: [28195]
    protein/RNA complex; complexed with trp
  22. Domain d1c9sv_: 1c9s V: [28196]
    protein/RNA complex; complexed with trp
2. Domains for 1gtf:
  1. Domain d1gtfa_: 1gtf A: [70460]
    protein/RNA complex; complexed with trp
  2. Domain d1gtfb_: 1gtf B: [70461]
    protein/RNA complex; complexed with trp
  3. Domain d1gtfc_: 1gtf C: [70462]
    protein/RNA complex; complexed with trp
  4. Domain d1gtfd_: 1gtf D: [70463]
    protein/RNA complex; complexed with trp
  5. Domain d1gtfe_: 1gtf E: [70464]
    protein/RNA complex; complexed with trp
  6. Domain d1gtff_: 1gtf F: [70465]
    protein/RNA complex; complexed with trp
  7. Domain d1gtfg_: 1gtf G: [70466]
    protein/RNA complex; complexed with trp
  8. Domain d1gtfh_: 1gtf H: [70467]
    protein/RNA complex; complexed with trp
  9. Domain d1gtfi_: 1gtf I: [70468]
    protein/RNA complex; complexed with trp
  10. Domain d1gtfj_: 1gtf J: [70469]
    protein/RNA complex; complexed with trp
  11. Domain d1gtfk_: 1gtf K: [70470]
    protein/RNA complex; complexed with trp
  12. Domain d1gtfl_: 1gtf L: [70471]
    protein/RNA complex; complexed with trp
  13. Domain d1gtfm_: 1gtf M: [70472]
    protein/RNA complex; complexed with trp
  14. Domain d1gtfn_: 1gtf N: [70473]
    protein/RNA complex; complexed with trp
  15. Domain d1gtfo_: 1gtf O: [70474]
    protein/RNA complex; complexed with trp
  16. Domain d1gtfp_: 1gtf P: [70475]
    protein/RNA complex; complexed with trp
  17. Domain d1gtfq_: 1gtf Q: [70476]
    protein/RNA complex; complexed with trp
  18. Domain d1gtfr_: 1gtf R: [70477]
    protein/RNA complex; complexed with trp
  19. Domain d1gtfs_: 1gtf S: [70478]
    protein/RNA complex; complexed with trp
  20. Domain d1gtft_: 1gtf T: [70479]
    protein/RNA complex; complexed with trp
  21. Domain d1gtfu_: 1gtf U: [70480]
    protein/RNA complex; complexed with trp
  22. Domain d1gtfv_: 1gtf V: [70481]
    protein/RNA complex; complexed with trp
3. Domains for 1gtn:
  1. Domain d1gtna_: 1gtn A: [70507]
    protein/RNA complex; complexed with trp
  2. Domain d1gtnb_: 1gtn B: [70508]
    protein/RNA complex; complexed with trp
  3. Domain d1gtnc_: 1gtn C: [70509]
    protein/RNA complex; complexed with trp
  4. Domain d1gtnd_: 1gtn D: [70510]
    protein/RNA complex; complexed with trp
  5. Domain d1gtne_: 1gtn E: [70511]
    protein/RNA complex; complexed with trp
  6. Domain d1gtnf_: 1gtn F: [70512]
    protein/RNA complex; complexed with trp
  7. Domain d1gtng_: 1gtn G: [70513]
    protein/RNA complex; complexed with trp
  8. Domain d1gtnh_: 1gtn H: [70514]
    protein/RNA complex; complexed with trp
  9. Domain d1gtni_: 1gtn I: [70515]
    protein/RNA complex; complexed with trp
  10. Domain d1gtnj_: 1gtn J: [70516]
    protein/RNA complex; complexed with trp
  11. Domain d1gtnk_: 1gtn K: [70517]
    protein/RNA complex; complexed with trp
  12. Domain d1gtnl_: 1gtn L: [70518]
    protein/RNA complex; complexed with trp
  13. Domain d1gtnm_: 1gtn M: [70519]
    protein/RNA complex; complexed with trp
  14. Domain d1gtnn_: 1gtn N: [70520]
    protein/RNA complex; complexed with trp
  15. Domain d1gtno_: 1gtn O: [70521]
    protein/RNA complex; complexed with trp
  16. Domain d1gtnp_: 1gtn P: [70522]
    protein/RNA complex; complexed with trp
  17. Domain d1gtnq_: 1gtn Q: [70523]
    protein/RNA complex; complexed with trp
  18. Domain d1gtnr_: 1gtn R: [70524]
    protein/RNA complex; complexed with trp
  19. Domain d1gtns_: 1gtn S: [70525]
    protein/RNA complex; complexed with trp
  20. Domain d1gtnt_: 1gtn T: [70526]
    protein/RNA complex; complexed with trp
  21. Domain d1gtnu_: 1gtn U: [70527]
    protein/RNA complex; complexed with trp
  22. Domain d1gtnv_: 1gtn V: [70528]
    protein/RNA complex; complexed with trp
4. Domains for 1qaw:
  1. Domain d1qawa_: 1qaw A: [28197]
    complexed with trp
  2. Domain d1qawb_: 1qaw B: [28198]
    complexed with trp
  3. Domain d1qawc_: 1qaw C: [28199]
    complexed with trp
  4. Domain d1qawd_: 1qaw D: [28200]
    complexed with trp
  5. Domain d1qawe_: 1qaw E: [28201]
    complexed with trp
  6. Domain d1qawf_: 1qaw F: [28202]
    complexed with trp
  7. Domain d1qawg_: 1qaw G: [28203]
    complexed with trp
  8. Domain d1qawh_: 1qaw H: [28204]
    complexed with trp
  9. Domain d1qawi_: 1qaw I: [28205]
    complexed with trp
  10. Domain d1qawj_: 1qaw J: [28206]
    complexed with trp
  11. Domain d1qawk_: 1qaw K: [28207]
    complexed with trp
5. Domains for 1utd:
  1. Domain d1utda_: 1utd A: [99918]
    complexed with trp
  2. Domain d1utdb_: 1utd B: [99919]
    complexed with trp
  3. Domain d1utdc_: 1utd C: [99920]
    complexed with trp
  4. Domain d1utdd_: 1utd D: [99921]
    complexed with trp
  5. Domain d1utde_: 1utd E: [99922]
    complexed with trp
  6. Domain d1utdf_: 1utd F: [99923]
    complexed with trp
  7. Domain d1utdg_: 1utd G: [99924]
    complexed with trp
  8. Domain d1utdh_: 1utd H: [99925]
    complexed with trp
  9. Domain d1utdi_: 1utd I: [99926]
    complexed with trp
  10. Domain d1utdj_: 1utd J: [99927]
    complexed with trp
  11. Domain d1utdk_: 1utd K: [99928]
    complexed with trp
  12. Domain d1utdl_: 1utd L: [99929]
    complexed with trp
  13. Domain d1utdm_: 1utd M: [99930]
    complexed with trp
  14. Domain d1utdn_: 1utd N: [99931]
    complexed with trp
  15. Domain d1utdo_: 1utd O: [99932]
    complexed with trp
  16. Domain d1utdp_: 1utd P: [99933]
    complexed with trp
  17. Domain d1utdq_: 1utd Q: [99934]
    complexed with trp
  18. Domain d1utdr_: 1utd R: [99935]
    complexed with trp
  19. Domain d1utds_: 1utd S: [99936]
    complexed with trp
  20. Domain d1utdt_: 1utd T: [99937]
    complexed with trp
  21. Domain d1utdu_: 1utd U: [99938]
    complexed with trp
  22. Domain d1utdv_: 1utd V: [99939]
    complexed with trp
6. Domains for 1utf:
  1. Domain d1utfa_: 1utf A: [99940]
    complexed with trp
    complexed with trp
  2. Domain d1utfb_: 1utf B: [99941]
    complexed with trp
    complexed with trp
  3. Domain d1utfc_: 1utf C: [99942]
    complexed with trp
    complexed with trp
  4. Domain d1utfd_: 1utf D: [99943]
    complexed with trp
    complexed with trp
  5. Domain d1utfe_: 1utf E: [99944]
    complexed with trp
    complexed with trp
  6. Domain d1utff_: 1utf F: [99945]
    complexed with trp
    complexed with trp
  7. Domain d1utfg_: 1utf G: [99946]
    complexed with trp
    complexed with trp
  8. Domain d1utfh_: 1utf H: [99947]
    complexed with trp
    complexed with trp
  9. Domain d1utfi_: 1utf I: [99948]
    complexed with trp
    complexed with trp
  10. Domain d1utfj_: 1utf J: [99949]
    complexed with trp
    complexed with trp
  11. Domain d1utfk_: 1utf K: [99950]
    complexed with trp
    complexed with trp
  12. Domain d1utfl_: 1utf L: [99951]
    complexed with trp
    complexed with trp
  13. Domain d1utfm_: 1utf M: [99952]
    complexed with trp
    complexed with trp
  14. Domain d1utfn_: 1utf N: [99953]
    complexed with trp
    complexed with trp
  15. Domain d1utfo_: 1utf O: [99954]
    complexed with trp
    complexed with trp
  16. Domain d1utfp_: 1utf P: [99955]
    complexed with trp
    complexed with trp
  17. Domain d1utfq_: 1utf Q: [99956]
    complexed with trp
    complexed with trp
  18. Domain d1utfr_: 1utf R: [99957]
    complexed with trp
    complexed with trp
  19. Domain d1utfs_: 1utf S: [99958]
    complexed with trp
    complexed with trp
  20. Domain d1utft_: 1utf T: [99959]
    complexed with trp
    complexed with trp
  21. Domain d1utfu_: 1utf U: [99960]
    complexed with trp
    complexed with trp
  22. Domain d1utfv_: 1utf V: [99961]
    complexed with trp
    complexed with trp
7. Domains for 1utv:
  1. Domain d1utva_: 1utv A: [99971]
    complexed with trp
    complexed with trp
  2. Domain d1utvb_: 1utv B: [99972]
    complexed with trp
    complexed with trp
  3. Domain d1utvc_: 1utv C: [99973]
    complexed with trp
    complexed with trp
  4. Domain d1utvd_: 1utv D: [99974]
    complexed with trp
    complexed with trp
  5. Domain d1utve_: 1utv E: [99975]
    complexed with trp
    complexed with trp
  6. Domain d1utvf_: 1utv F: [99976]
    complexed with trp
    complexed with trp
  7. Domain d1utvg_: 1utv G: [99977]
    complexed with trp
    complexed with trp
  8. Domain d1utvh_: 1utv H: [99978]
    complexed with trp
    complexed with trp
  9. Domain d1utvi_: 1utv I: [99979]
    complexed with trp
    complexed with trp
  10. Domain d1utvj_: 1utv J: [99980]
    complexed with trp
    complexed with trp
  11. Domain d1utvk_: 1utv K: [99981]
    complexed with trp
    complexed with trp
  12. Domain d1utvl_: 1utv L: [99982]
    complexed with trp
    complexed with trp
  13. Domain d1utvm_: 1utv M: [99983]
    complexed with trp
    complexed with trp
  14. Domain d1utvn_: 1utv N: [99984]
    complexed with trp
    complexed with trp
  15. Domain d1utvo_: 1utv O: [99985]
    complexed with trp
    complexed with trp
  16. Domain d1utvp_: 1utv P: [99986]
    complexed with trp
    complexed with trp
  17. Domain d1utvq_: 1utv Q: [99987]
    complexed with trp
    complexed with trp
  18. Domain d1utvr_: 1utv R: [99988]
    complexed with trp
    complexed with trp
  19. Domain d1utvs_: 1utv S: [99989]
    complexed with trp
    complexed with trp
  20. Domain d1utvt_: 1utv T: [99990]
    complexed with trp
    complexed with trp
  21. Domain d1utvu_: 1utv U: [99991]
    complexed with trp
    complexed with trp
  22. Domain d1utvv_: 1utv V: [99992]
    complexed with trp
    complexed with trp
8. Domains for 2exs:
  1. Domain d2exsa_: 2exs A: [164207]
    automated match to d1c9sm_
    complexed with trp
  2. Domain d2exsb_: 2exs B: [164208]
    automated match to d1c9sm_
    complexed with trp
  3. Domain d2exsc_: 2exs C: [164209]
    automated match to d1c9sm_
    complexed with trp
9. Domains for 2ext:
  1. Domain d2exta_: 2ext A: [132563]
    automated match to d1c9sm_
    complexed with trp
  2. Domain d2extb_: 2ext B: [132564]
    automated match to d1c9sm_
    complexed with trp
  3. Domain d2extc_: 2ext C: [132565]
    automated match to d1c9sm_
    complexed with trp
10. Domains for 2zcz:
  1. Domain d2zcza2: 2zcz A:7-78 [154379]
    Other proteins in same PDB: d2zcza3, d2zczd3
    automated match to d1c9sm_
    complexed with trp; mutant
  2. Domain d2zczb_: 2zcz B: [154380]
    Other proteins in same PDB: d2zcza3, d2zczd3
    automated match to d1c9sm_
    complexed with trp; mutant
  3. Domain d2zczc_: 2zcz C: [154381]
    Other proteins in same PDB: d2zcza3, d2zczd3
    automated match to d1c9sm_
    complexed with trp; mutant
  4. Domain d2zczd2: 2zcz D:7-78 [154382]
    Other proteins in same PDB: d2zcza3, d2zczd3
    automated match to d1c9sm_
    complexed with trp; mutant
  5. Domain d2zcze_: 2zcz E: [154383]
    Other proteins in same PDB: d2zcza3, d2zczd3
    automated match to d1c9sm_
    complexed with trp; mutant
  6. Domain d2zczf_: 2zcz F: [154384]
    Other proteins in same PDB: d2zcza3, d2zczd3
    automated match to d1c9sm_
    complexed with trp; mutant
11. Domains for 2zd0:
  1. Domain d2zd0a_: 2zd0 A: [154385]
    automated match to d1c9sm_
    complexed with trp; mutant
  2. Domain d2zd0b_: 2zd0 B: [154386]
    automated match to d1c9sm_
    complexed with trp; mutant
  3. Domain d2zd0c_: 2zd0 C: [154387]
    automated match to d1c9sm_
    complexed with trp; mutant
Bacillus subtilis [TaxId:1423] [51222] (1 PDB entry)
- Domains for 1wap:
  1. Domain d1wapa_: 1wap A: [28153]
    protein/RNA complex; complexed with trp
  2. Domain d1wapb_: 1wap B: [28154]
    protein/RNA complex; complexed with trp
  3. Domain d1wapc_: 1wap C: [28155]
    protein/RNA complex; complexed with trp
  4. Domain d1wapd_: 1wap D: [28156]
    protein/RNA complex; complexed with trp
  5. Domain d1wape_: 1wap E: [28157]
    protein/RNA complex; complexed with trp
  6. Domain d1wapf_: 1wap F: [28158]
    protein/RNA complex; complexed with trp
  7. Domain d1wapg_: 1wap G: [28159]
    protein/RNA complex; complexed with trp
  8. Domain d1waph_: 1wap H: [28160]
    protein/RNA complex; complexed with trp
  9. Domain d1wapi_: 1wap I: [28161]
    protein/RNA complex; complexed with trp
  10. Domain d1wapj_: 1wap J: [28162]
    protein/RNA complex; complexed with trp
  11. Domain d1wapk_: 1wap K: [28163]
    protein/RNA complex; complexed with trp
  12. Domain d1wapl_: 1wap L: [28164]
    protein/RNA complex; complexed with trp
  13. Domain d1wapm_: 1wap M: [28165]
    protein/RNA complex; complexed with trp
  14. Domain d1wapn_: 1wap N: [28166]
    protein/RNA complex; complexed with trp
  15. Domain d1wapo_: 1wap O: [28167]
    protein/RNA complex; complexed with trp
  16. Domain d1wapp_: 1wap P: [28168]
    protein/RNA complex; complexed with trp
  17. Domain d1wapq_: 1wap Q: [28169]
    protein/RNA complex; complexed with trp
  18. Domain d1wapr_: 1wap R: [28170]
    protein/RNA complex; complexed with trp
  19. Domain d1waps_: 1wap S: [28171]
    protein/RNA complex; complexed with trp
  20. Domain d1wapt_: 1wap T: [28172]
    protein/RNA complex; complexed with trp
  21. Domain d1wapu_: 1wap U: [28173]
    protein/RNA complex; complexed with trp
  22. Domain d1wapv_: 1wap V: [28174]
    protein/RNA complex; complexed with trp

More info for Protein Trp RNA-binding attenuation protein (TRAP) from b.82.5.1: Trp RNA-binding attenuation protein (TRAP)

Timeline for Protein Trp RNA-binding attenuation protein (TRAP) from b.82.5.1: Trp RNA-binding attenuation protein (TRAP):

Protein Trp RNA-binding attenuation protein (TRAP) from b.82.5.1: Trp RNA-binding attenuation protein (TRAP) first appeared (with stable ids) in SCOP 1.55
Protein Trp RNA-binding attenuation protein (TRAP) from b.82.5.1: Trp RNA-binding attenuation protein (TRAP) appears in SCOPe 2.07