Lineage for Protein: automated matches

  1. Root: SCOPe 2.05
  2. 1715731Class a: All alpha proteins [46456] (286 folds)
  3. 1715732Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1715733Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1718119Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502
  6. 1718294Protein automated matches [190531] (16 species)
    not a true protein

Species:

  1. 1718295Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
  2. 1718298Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    1. Domains for 2vjh:
      1. 1718299Domain d2vjha_: 2vjh A: [168645]
        automated match to d1b8da_
        complexed with peb, pub
      2. 1718300Domain d2vjhb_: 2vjh B: [168646]
        automated match to d1qgwd_
        complexed with peb, pub
      3. 1718301Domain d2vjhc_: 2vjh C: [168647]
        automated match to d1b8da_
        complexed with peb, pub
      4. 1718302Domain d2vjhd_: 2vjh D: [168648]
        automated match to d1qgwd_
        complexed with peb, pub
    2. Domains for 2vjr:
      1. 1718317Domain d2vjra_: 2vjr A: [168659]
        automated match to d1i7ya_
        complexed with cyc
      2. 1718318Domain d2vjrb_: 2vjr B: [168660]
        automated match to d1i7yb_
        complexed with cyc
    3. Domains for 2vjt:
      1. 1718315Domain d2vjta_: 2vjt A: [168661]
        automated match to d1kn1a_
        complexed with cyc
      2. 1718316Domain d2vjtb_: 2vjt B: [168662]
        automated match to d1allb_
        complexed with cyc
    4. Domains for 2vml:
      1. 1718303Domain d2vmla_: 2vml A: [168702]
        automated match to d1i7ya_
        complexed with cyc
      2. 1718304Domain d2vmlb_: 2vml B: [168703]
        automated match to d1i7yb_
        complexed with cyc
      3. 1718305Domain d2vmlc_: 2vml C: [168704]
        automated match to d1i7ya_
        complexed with cyc
      4. 1718306Domain d2vmld_: 2vml D: [168705]
        automated match to d1i7yb_
        complexed with cyc
      5. 1718307Domain d2vmle_: 2vml E: [168706]
        automated match to d1i7ya_
        complexed with cyc
      6. 1718308Domain d2vmlf_: 2vml F: [168707]
        automated match to d1i7yb_
        complexed with cyc
      7. 1718309Domain d2vmlg_: 2vml G: [168708]
        automated match to d1i7ya_
        complexed with cyc
      8. 1718310Domain d2vmlh_: 2vml H: [168709]
        automated match to d1i7yb_
        complexed with cyc
      9. 1718311Domain d2vmli_: 2vml I: [168710]
        automated match to d1i7ya_
        complexed with cyc
      10. 1718312Domain d2vmlj_: 2vml J: [168711]
        automated match to d1i7yb_
        complexed with cyc
      11. 1718313Domain d2vmlk_: 2vml K: [168712]
        automated match to d1i7ya_
        complexed with cyc
      12. 1718314Domain d2vmll_: 2vml L: [168713]
        automated match to d1i7yb_
        complexed with cyc
  3. 1718319Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
  4. 1718326Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
  5. 1718329Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
  6. 1718354Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
  7. 1718361Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    1. Domains for 2c7j:
      1. 1718366Domain d2c7ja_: 2c7j A: [241425]
        automated match to d2j96a_
        complexed with bla, cyc
      2. 1718367Domain d2c7jb_: 2c7j B: [241426]
        automated match to d2c7lb_
        complexed with bla, cyc
    2. Domains for 2c7l:
      1. 1718364Domain d2c7la_: 2c7l A: [163287]
        automated match to d1i7ya_
        complexed with bla, cyc
      2. 1718365Domain d2c7lb_: 2c7l B: [163288]
        automated match to d1i7yb_
        complexed with bla, cyc
    3. Domains for 2j96:
      1. 1718362Domain d2j96a_: 2j96 A: [165947]
        automated match to d1i7ya_
        complexed with pvn
      2. 1718363Domain d2j96b_: 2j96 B: [165948]
        automated match to d1i7ya_
        complexed with pvn
  8. 1718368Phormidium rubidum [TaxId:865859] [272704] (1 PDB entry)
  9. 1718371Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
  10. 1718396Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    1. Domains for 3v57:
      1. 1718397Domain d3v57a_: 3v57 A: [217667]
        automated match to d3v58c_
        complexed with peb, so4
      2. 1718398Domain d3v57b_: 3v57 B: [217668]
        automated match to d3v58b_
        complexed with peb, so4
      3. 1718399Domain d3v57c_: 3v57 C: [217669]
        automated match to d3v58c_
        complexed with peb, so4
      4. 1718400Domain d3v57d_: 3v57 D: [217670]
        automated match to d3v58b_
        complexed with peb, so4
    2. Domains for 3v58:
      1. 1718401Domain d3v58a_: 3v58 A: [201158]
        automated match to d3v58c_
        complexed with peb, so4
      2. 1718402Domain d3v58b_: 3v58 B: [194585]
        automated match to d1liab_
        complexed with peb, so4
      3. 1718403Domain d3v58c_: 3v58 C: [194586]
        automated match to d1eyxa_
        complexed with peb, so4
      4. 1718404Domain d3v58d_: 3v58 D: [201159]
        automated match to d3v58b_
        complexed with peb, so4
  11. 1718405Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    1. Domains for 3brp:
      1. 1718408Domain d3brpa_: 3brp A: [172801]
        automated match to d1phna_
        complexed with bla
      2. 1718409Domain d3brpb_: 3brp B: [172802]
        automated match to d1phnb_
        complexed with bla
    2. Domains for 3kvs:
      1. 1718406Domain d3kvsa_: 3kvs A: [179738]
        automated match to d1phna_
        complexed with bla
      2. 1718407Domain d3kvsb_: 3kvs B: [179739]
        automated match to d1phnb_
        complexed with bla
  12. 1718410Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (1 PDB entry)
  13. 1718423Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
  14. 1718436Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    1. Domains for 4f0u:
      1. 1718461Domain d4f0ua_: 4f0u A: [201981]
        automated match to d4f0uc_
        complexed with cyc
      2. 1718462Domain d4f0ub_: 4f0u B: [193925]
        automated match to d3dbjb_
        complexed with cyc
      3. 1718463Domain d4f0uc_: 4f0u C: [193920]
        automated match to d1kn1a_
        complexed with cyc
      4. 1718464Domain d4f0ud_: 4f0u D: [201982]
        automated match to d4f0uf_
        complexed with cyc
      5. 1718465Domain d4f0ue_: 4f0u E: [201983]
        automated match to d4f0uc_
        complexed with cyc
      6. 1718466Domain d4f0uf_: 4f0u F: [193922]
        automated match to d3dbjb_
        complexed with cyc
    2. Domains for 4h0m:
      1. 1718437Domain d4h0ma_: 4h0m A: [202323]
        automated match to d4h0me_
        complexed with cyc
      2. 1718438Domain d4h0mb_: 4h0m B: [202324]
        automated match to d4h0mp_
        complexed with cyc
      3. 1718439Domain d4h0mc_: 4h0m C: [202325]
        automated match to d4h0me_
        complexed with cyc
      4. 1718440Domain d4h0md_: 4h0m D: [202326]
        automated match to d4h0mp_
        complexed with cyc
      5. 1718441Domain d4h0me_: 4h0m E: [193232]
        automated match to d1ha7a_
        complexed with cyc
      6. 1718442Domain d4h0mf_: 4h0m F: [202327]
        automated match to d4h0mp_
        complexed with cyc
      7. 1718443Domain d4h0mg_: 4h0m G: [202328]
        automated match to d4h0me_
        complexed with cyc
      8. 1718444Domain d4h0mh_: 4h0m H: [202329]
        automated match to d4h0mp_
        complexed with cyc
      9. 1718445Domain d4h0mi_: 4h0m I: [202330]
        automated match to d4h0me_
        complexed with cyc
      10. 1718446Domain d4h0mj_: 4h0m J: [202331]
        automated match to d4h0mp_
        complexed with cyc
      11. 1718447Domain d4h0mk_: 4h0m K: [202332]
        automated match to d4h0me_
        complexed with cyc
      12. 1718448Domain d4h0ml_: 4h0m L: [202333]
        automated match to d4h0mp_
        complexed with cyc
      13. 1718449Domain d4h0mm_: 4h0m M: [202334]
        automated match to d4h0me_
        complexed with cyc
      14. 1718450Domain d4h0mn_: 4h0m N: [202335]
        automated match to d4h0mp_
        complexed with cyc
      15. 1718451Domain d4h0mo_: 4h0m O: [202336]
        automated match to d4h0me_
        complexed with cyc
      16. 1718452Domain d4h0mp_: 4h0m P: [193915]
        automated match to d1cpcb_
        complexed with cyc
      17. 1718453Domain d4h0mq_: 4h0m Q: [202337]
        automated match to d4h0me_
        complexed with cyc
      18. 1718454Domain d4h0mr_: 4h0m R: [193916]
        automated match to d1cpcb_
        complexed with cyc
      19. 1718455Domain d4h0ms_: 4h0m S: [202338]
        automated match to d4h0me_
        complexed with cyc
      20. 1718456Domain d4h0mt_: 4h0m T: [202339]
        automated match to d4h0mp_
        complexed with cyc
      21. 1718457Domain d4h0mu_: 4h0m U: [202340]
        automated match to d4h0me_
        complexed with cyc
      22. 1718458Domain d4h0mv_: 4h0m V: [202341]
        automated match to d4h0mp_
        complexed with cyc
      23. 1718459Domain d4h0mw_: 4h0m W: [202342]
        automated match to d4h0me_
        complexed with cyc
      24. 1718460Domain d4h0mx_: 4h0m X: [202343]
        automated match to d4h0mp_
        complexed with cyc
  15. 1718467Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    1. Domains for 4f0t:
      1. 1718471Domain d4f0ta_: 4f0t A: [193924]
        automated match to d1ha7a_
        complexed with cyc
      2. 1718472Domain d4f0tb_: 4f0t B: [193923]
        automated match to d1gh0b_
        complexed with cyc
    2. Domains for 4po5:
      1. 1718468Domain d4po5b_: 4po5 B: [260744]
        Other proteins in same PDB: d4po5a_, d4po5c_, d4po5e_
        automated match to d3dbjb_
        complexed with cyc, so4
      2. 1718469Domain d4po5d_: 4po5 D: [263554]
        Other proteins in same PDB: d4po5a_, d4po5c_, d4po5e_
        automated match to d4po5b_
        complexed with cyc, so4
      3. 1718470Domain d4po5f_: 4po5 F: [260743]
        Other proteins in same PDB: d4po5a_, d4po5c_, d4po5e_
        automated match to d3dbjb_
        complexed with cyc, so4
  16. 1718473Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)

More info for Protein automated matches from a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Protein automated matches from a.1.1.3: Phycocyanin-like phycobilisome proteins: