Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1473060Class a: All alpha proteins [46456] (285 folds)
  3. 1473061Fold a.1: Globin-like [46457] (2 superfamilies)
    core: 6 helices; folded leaf, partly opened
  4. 1473062Superfamily a.1.1: Globin-like [46458] (5 families) (S)
  5. 1475382Family a.1.1.3: Phycocyanin-like phycobilisome proteins [46532] (7 proteins)
    oligomers of two different types of globin-like subunits containing two extra helices at the N-terminus
    binds a bilin chromophore
    automatically mapped to Pfam PF00502
  6. 1475551Protein automated matches [190531] (15 species)
    not a true protein

Species:

  1. 1475552Chroomonas sp. [TaxId:3029] [257042] (1 PDB entry)
  2. 1475555Gloeobacter violaceus [TaxId:33072] [188397] (4 PDB entries)
    1. Domains for 2vjh:
      1. 1475556Domain d2vjha_: 2vjh A: [168645]
        automated match to d1b8da_
        complexed with peb, pub
      2. 1475557Domain d2vjhb_: 2vjh B: [168646]
        automated match to d1qgwd_
        complexed with peb, pub
      3. 1475558Domain d2vjhc_: 2vjh C: [168647]
        automated match to d1b8da_
        complexed with peb, pub
      4. 1475559Domain d2vjhd_: 2vjh D: [168648]
        automated match to d1qgwd_
        complexed with peb, pub
    2. Domains for 2vjr:
      1. 1475574Domain d2vjra_: 2vjr A: [168659]
        automated match to d1i7ya_
        complexed with cyc
      2. 1475575Domain d2vjrb_: 2vjr B: [168660]
        automated match to d1i7yb_
        complexed with cyc
    3. Domains for 2vjt:
      1. 1475572Domain d2vjta_: 2vjt A: [168661]
        automated match to d1kn1a_
        complexed with cyc
      2. 1475573Domain d2vjtb_: 2vjt B: [168662]
        automated match to d1allb_
        complexed with cyc
    4. Domains for 2vml:
      1. 1475560Domain d2vmla_: 2vml A: [168702]
        automated match to d1i7ya_
        complexed with cyc
      2. 1475561Domain d2vmlb_: 2vml B: [168703]
        automated match to d1i7yb_
        complexed with cyc
      3. 1475562Domain d2vmlc_: 2vml C: [168704]
        automated match to d1i7ya_
        complexed with cyc
      4. 1475563Domain d2vmld_: 2vml D: [168705]
        automated match to d1i7yb_
        complexed with cyc
      5. 1475564Domain d2vmle_: 2vml E: [168706]
        automated match to d1i7ya_
        complexed with cyc
      6. 1475565Domain d2vmlf_: 2vml F: [168707]
        automated match to d1i7yb_
        complexed with cyc
      7. 1475566Domain d2vmlg_: 2vml G: [168708]
        automated match to d1i7ya_
        complexed with cyc
      8. 1475567Domain d2vmlh_: 2vml H: [168709]
        automated match to d1i7yb_
        complexed with cyc
      9. 1475568Domain d2vmli_: 2vml I: [168710]
        automated match to d1i7ya_
        complexed with cyc
      10. 1475569Domain d2vmlj_: 2vml J: [168711]
        automated match to d1i7yb_
        complexed with cyc
      11. 1475570Domain d2vmlk_: 2vml K: [168712]
        automated match to d1i7ya_
        complexed with cyc
      12. 1475571Domain d2vmll_: 2vml L: [168713]
        automated match to d1i7yb_
        complexed with cyc
  3. 1475576Hemiselmis andersenii [TaxId:464988] [257044] (1 PDB entry)
  4. 1475579Hemiselmis virescens [TaxId:77927] [257033] (1 PDB entry)
  5. 1475582Leptolyngbya sp. [TaxId:47254] [255594] (1 PDB entry)
  6. 1475607Leptolyngbya sp. [TaxId:574115] [256954] (1 PDB entry)
  7. 1475610Mastigocladus laminosus [TaxId:83541] [187515] (3 PDB entries)
    1. Domains for 2c7j:
      1. 1475613Domain d2c7ja_: 2c7j A: [241425]
        automated match to d2j96a_
        complexed with bla, cyc
      2. 1475614Domain d2c7jb_: 2c7j B: [241426]
        automated match to d2c7lb_
        complexed with bla, cyc
    2. Domains for 2c7l:
      1. 1475615Domain d2c7la_: 2c7l A: [163287]
        automated match to d1i7ya_
        complexed with bla, cyc
      2. 1475616Domain d2c7lb_: 2c7l B: [163288]
        automated match to d1i7yb_
        complexed with bla, cyc
    3. Domains for 2j96:
      1. 1475611Domain d2j96a_: 2j96 A: [165947]
        automated match to d1i7ya_
        complexed with pvn
      2. 1475612Domain d2j96b_: 2j96 B: [165948]
        automated match to d1i7ya_
        complexed with pvn
  8. 1475617Phormidium sp. [TaxId:1199] [255592] (1 PDB entry)
  9. 1475642Red alga (Porphyridium purpureum) [TaxId:35688] [194584] (2 PDB entries)
    1. Domains for 3v57:
      1. 1475643Domain d3v57a_: 3v57 A: [217667]
        automated match to d3v58c_
        complexed with peb, so4
      2. 1475644Domain d3v57b_: 3v57 B: [217668]
        automated match to d3v58b_
        complexed with peb, so4
      3. 1475645Domain d3v57c_: 3v57 C: [217669]
        automated match to d3v58c_
        complexed with peb, so4
      4. 1475646Domain d3v57d_: 3v57 D: [217670]
        automated match to d3v58b_
        complexed with peb, so4
    2. Domains for 3v58:
      1. 1475647Domain d3v58a_: 3v58 A: [201158]
        automated match to d3v58c_
        complexed with peb, so4
      2. 1475648Domain d3v58b_: 3v58 B: [194585]
        automated match to d1liab_
        complexed with peb, so4
      3. 1475649Domain d3v58c_: 3v58 C: [194586]
        automated match to d1eyxa_
        complexed with peb, so4
      4. 1475650Domain d3v58d_: 3v58 D: [201159]
        automated match to d3v58b_
        complexed with peb, so4
  10. 1475651Red algae (Galdieria sulphuraria) [TaxId:130081] [188789] (2 PDB entries)
    1. Domains for 3brp:
      1. 1475654Domain d3brpa_: 3brp A: [172801]
        automated match to d1phna_
        complexed with bla
      2. 1475655Domain d3brpb_: 3brp B: [172802]
        automated match to d1phnb_
        complexed with bla
    2. Domains for 3kvs:
      1. 1475652Domain d3kvsa_: 3kvs A: [179738]
        automated match to d1phna_
        complexed with bla
      2. 1475653Domain d3kvsb_: 3kvs B: [179739]
        automated match to d1phnb_
        complexed with bla
  11. 1475656Red algae (Gracilaria chilensis) [TaxId:2775] [187492] (1 PDB entry)
  12. 1475669Spirulina sp. [TaxId:1157] [255593] (1 PDB entry)
  13. 1475682Synechococcus elongatus [TaxId:1140] [193231] (2 PDB entries)
    1. Domains for 4f0u:
      1. 1475707Domain d4f0ua_: 4f0u A: [201981]
        automated match to d4f0uc_
        complexed with cyc
      2. 1475708Domain d4f0ub_: 4f0u B: [193925]
        automated match to d3dbjb_
        complexed with cyc
      3. 1475709Domain d4f0uc_: 4f0u C: [193920]
        automated match to d1kn1a_
        complexed with cyc
      4. 1475710Domain d4f0ud_: 4f0u D: [201982]
        automated match to d4f0uf_
        complexed with cyc
      5. 1475711Domain d4f0ue_: 4f0u E: [201983]
        automated match to d4f0uc_
        complexed with cyc
      6. 1475712Domain d4f0uf_: 4f0u F: [193922]
        automated match to d3dbjb_
        complexed with cyc
    2. Domains for 4h0m:
      1. 1475683Domain d4h0ma_: 4h0m A: [202323]
        automated match to d4h0me_
        complexed with cyc
      2. 1475684Domain d4h0mb_: 4h0m B: [202324]
        automated match to d4h0mp_
        complexed with cyc
      3. 1475685Domain d4h0mc_: 4h0m C: [202325]
        automated match to d4h0me_
        complexed with cyc
      4. 1475686Domain d4h0md_: 4h0m D: [202326]
        automated match to d4h0mp_
        complexed with cyc
      5. 1475687Domain d4h0me_: 4h0m E: [193232]
        automated match to d1ha7a_
        complexed with cyc
      6. 1475688Domain d4h0mf_: 4h0m F: [202327]
        automated match to d4h0mp_
        complexed with cyc
      7. 1475689Domain d4h0mg_: 4h0m G: [202328]
        automated match to d4h0me_
        complexed with cyc
      8. 1475690Domain d4h0mh_: 4h0m H: [202329]
        automated match to d4h0mp_
        complexed with cyc
      9. 1475691Domain d4h0mi_: 4h0m I: [202330]
        automated match to d4h0me_
        complexed with cyc
      10. 1475692Domain d4h0mj_: 4h0m J: [202331]
        automated match to d4h0mp_
        complexed with cyc
      11. 1475693Domain d4h0mk_: 4h0m K: [202332]
        automated match to d4h0me_
        complexed with cyc
      12. 1475694Domain d4h0ml_: 4h0m L: [202333]
        automated match to d4h0mp_
        complexed with cyc
      13. 1475695Domain d4h0mm_: 4h0m M: [202334]
        automated match to d4h0me_
        complexed with cyc
      14. 1475696Domain d4h0mn_: 4h0m N: [202335]
        automated match to d4h0mp_
        complexed with cyc
      15. 1475697Domain d4h0mo_: 4h0m O: [202336]
        automated match to d4h0me_
        complexed with cyc
      16. 1475698Domain d4h0mp_: 4h0m P: [193915]
        automated match to d1cpcb_
        complexed with cyc
      17. 1475699Domain d4h0mq_: 4h0m Q: [202337]
        automated match to d4h0me_
        complexed with cyc
      18. 1475700Domain d4h0mr_: 4h0m R: [193916]
        automated match to d1cpcb_
        complexed with cyc
      19. 1475701Domain d4h0ms_: 4h0m S: [202338]
        automated match to d4h0me_
        complexed with cyc
      20. 1475702Domain d4h0mt_: 4h0m T: [202339]
        automated match to d4h0mp_
        complexed with cyc
      21. 1475703Domain d4h0mu_: 4h0m U: [202340]
        automated match to d4h0me_
        complexed with cyc
      22. 1475704Domain d4h0mv_: 4h0m V: [202341]
        automated match to d4h0mp_
        complexed with cyc
      23. 1475705Domain d4h0mw_: 4h0m W: [202342]
        automated match to d4h0me_
        complexed with cyc
      24. 1475706Domain d4h0mx_: 4h0m X: [202343]
        automated match to d4h0mp_
        complexed with cyc
  14. 1475713Synechocystis sp. [TaxId:1111708] [193921] (2 PDB entries)
    1. Domains for 4f0t:
      1. 1475716Domain d4f0ta_: 4f0t A: [193924]
        automated match to d1ha7a_
        complexed with cyc
      2. 1475717Domain d4f0tb_: 4f0t B: [193923]
        automated match to d1gh0b_
        complexed with cyc
    2. Domains for 4po5:
      1. 1475714Domain d4po5b_: 4po5 B: [260744]
        Other proteins in same PDB: d4po5a_
        automated match to d3dbjb_
        complexed with cyc, so4
      2. 1475715Domain d4po5f_: 4po5 F: [260743]
        Other proteins in same PDB: d4po5a_
        automated match to d3dbjb_
        complexed with cyc, so4
  15. 1475718Thermosynechococcus vulcanus [TaxId:32053] [188656] (1 PDB entry)

More info for Protein automated matches from a.1.1.3: Phycocyanin-like phycobilisome proteins

Timeline for Protein automated matches from a.1.1.3: Phycocyanin-like phycobilisome proteins: