Lineage for Protein: automated matches

  1. Root: SCOPe 2.04
  2. 1565955Class c: Alpha and beta proteins (a/b) [51349] (148 folds)
  3. 1619978Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
    consists of two intertwined (sub)domains related by pseudo dyad; duplication
    3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest
  4. 1619979Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families) (S)
    the constituent families form similar dimers
  5. 1619980Family c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases [53660] (4 proteins)
    the active site is between the two identical subunits
  6. 1620086Protein automated matches [190072] (18 species)
    not a true protein

Species:

  1. 1620087Acidithiobacillus thiooxidans [TaxId:930] [187607] (1 PDB entry)
  2. 1620092Archaeoglobus fulgidus [TaxId:2234] [187335] (1 PDB entry)
  3. 1620095Bacillus coagulans [TaxId:1398] [186792] (2 PDB entries)
    1. Domains for 1v53:
      1. 1620096Domain d1v53a_: 1v53 A: [119836]
        automated match to d2ayqb_
      2. 1620097Domain d1v53b_: 1v53 B: [119837]
        automated match to d2ayqb_
    2. Domains for 1v5b:
      1. 1620098Domain d1v5ba_: 1v5b A: [161828]
        automated match to d2ayqb_
        complexed with so4; mutant
      2. 1620099Domain d1v5bb_: 1v5b B: [161829]
        automated match to d2ayqb_
        complexed with so4; mutant
      3. 1620100Domain d1v5bc_: 1v5b C: [161830]
        automated match to d2ayqb_
        complexed with so4; mutant
      4. 1620101Domain d1v5bd_: 1v5b D: [161831]
        automated match to d2ayqb_
        complexed with so4; mutant
      5. 1620102Domain d1v5be_: 1v5b E: [161832]
        automated match to d2ayqb_
        complexed with so4; mutant
      6. 1620103Domain d1v5bf_: 1v5b F: [161833]
        automated match to d2ayqb_
        complexed with so4; mutant
      7. 1620104Domain d1v5bg_: 1v5b G: [161834]
        automated match to d2ayqb_
        complexed with so4; mutant
      8. 1620105Domain d1v5bh_: 1v5b H: [161835]
        automated match to d2ayqb_
        complexed with so4; mutant
  4. 1620106Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225478] (4 PDB entries)
    1. Domains for 2qfv:
      1. 1620113Domain d2qfva_: 2qfv A: [205785]
        automated match to d4hcxb_
        complexed with nap
      2. 1620114Domain d2qfvb_: 2qfv B: [205786]
        automated match to d4hcxb_
        complexed with nap
      3. 1620115Domain d2qfvc_: 2qfv C: [205787]
        automated match to d4hcxb_
        complexed with nap
      4. 1620116Domain d2qfvd_: 2qfv D: [205788]
        automated match to d4hcxb_
        complexed with nap
    2. Domains for 2qfw:
      1. 1620123Domain d2qfwa_: 2qfw A: [205789]
        automated match to d4hcxb_
        complexed with ict
      2. 1620124Domain d2qfwb_: 2qfw B: [205790]
        automated match to d4hcxb_
        complexed with ict
      3. 1620125Domain d2qfwc_: 2qfw C: [205791]
        automated match to d4hcxb_
        complexed with ict
      4. 1620126Domain d2qfwd_: 2qfw D: [205792]
        automated match to d4hcxb_
        complexed with ict
      5. 1620127Domain d2qfwe_: 2qfw E: [205793]
        automated match to d4hcxb_
        complexed with ict
      6. 1620128Domain d2qfwf_: 2qfw F: [205794]
        automated match to d4hcxb_
        complexed with ict
    3. Domains for 2qfx:
      1. 1620117Domain d2qfxa_: 2qfx A: [205795]
        automated match to d4hcxb_
        complexed with akg, ca, ndp
      2. 1620118Domain d2qfxb_: 2qfx B: [205796]
        automated match to d4hcxb_
        complexed with akg, ca, ndp
      3. 1620119Domain d2qfxc_: 2qfx C: [205797]
        automated match to d4hcxb_
        complexed with akg, ca, ndp
      4. 1620120Domain d2qfxd_: 2qfx D: [205798]
        automated match to d4hcxb_
        complexed with akg, ca, ndp
      5. 1620121Domain d2qfxe_: 2qfx E: [205799]
        automated match to d4hcxb_
        complexed with akg, ca, ndp
      6. 1620122Domain d2qfxf_: 2qfx F: [205800]
        automated match to d4hcxb_
        complexed with akg, ca, ndp
    4. Domains for 2qfy:
      1. 1620107Domain d2qfya_: 2qfy A: [205801]
        automated match to d4hcxb_
        complexed with akg
      2. 1620108Domain d2qfyb_: 2qfy B: [205802]
        automated match to d4hcxb_
        complexed with akg
      3. 1620109Domain d2qfyc_: 2qfy C: [205803]
        automated match to d4hcxb_
        complexed with akg
      4. 1620110Domain d2qfyd_: 2qfy D: [205804]
        automated match to d4hcxb_
        complexed with akg
      5. 1620111Domain d2qfye_: 2qfy E: [205805]
        automated match to d4hcxb_
        complexed with akg
      6. 1620112Domain d2qfyf_: 2qfy F: [205806]
        automated match to d4hcxb_
        complexed with akg
  5. 1620129Burkholderia pseudomallei [TaxId:28450] [188497] (1 PDB entry)
  6. 1620131Burkholderia thailandensis [TaxId:271848] [193254] (1 PDB entry)
  7. 1620134Campylobacter jejuni [TaxId:197] [189804] (2 PDB entries)
    1. Domain for 3udo:
    2. Domains for 3udu:
      1. 1620135Domain d3udua_: 3udu A: [186239]
        automated match to d1cm7a_
        complexed with cl, edo
      2. 1620136Domain d3udub_: 3udu B: [186240]
        automated match to d1cm7a_
        complexed with cl, edo
      3. 1620137Domain d3uduc_: 3udu C: [186241]
        automated match to d1cm7a_
        complexed with cl, edo
      4. 1620138Domain d3udud_: 3udu D: [186242]
        automated match to d1cm7a_
        complexed with cl, edo
      5. 1620139Domain d3udue_: 3udu E: [186243]
        automated match to d1cm7a_
        complexed with cl, edo
      6. 1620140Domain d3uduf_: 3udu F: [186244]
        automated match to d1cm7a_
        complexed with cl, edo
      7. 1620141Domain d3udug_: 3udu G: [186245]
        automated match to d1cm7a_
        complexed with cl, edo
      8. 1620142Domain d3uduh_: 3udu H: [186246]
        automated match to d1cm7a_
        complexed with cl, edo
  8. 1620144Escherichia coli K-12 [TaxId:83333] [189313] (1 PDB entry)
  9. 1620147Escherichia coli [TaxId:562] [193425] (5 PDB entries)
    1. Domain for 4aja:
    2. Domain for 4ajb:
    3. Domain for 4ajc:
    4. Domain for 4ajr:
    5. Domain for 4ajs:
  10. 1620153Escherichia coli [TaxId:833333] [194427] (1 PDB entry)
  11. 1620155Human (Homo sapiens) [TaxId:9606] [189131] (9 PDB entries)
    1. Domains for 3inm:
      1. 1620166Domain d3inma_: 3inm A: [178460]
        automated match to d1t09a_
        protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
      2. 1620167Domain d3inmb_: 3inm B: [178461]
        automated match to d1t09a_
        protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
      3. 1620168Domain d3inmc_: 3inm C: [178462]
        automated match to d1t09a_
        protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
    2. Domains for 3map:
      1. 1620182Domain d3mapa_: 3map A: [180990]
        automated match to d1t09a_
        complexed with ict, nap; mutant
      2. 1620183Domain d3mapb_: 3map B: [180991]
        automated match to d1t09a_
        complexed with ict, nap; mutant
    3. Domains for 4ja8:
      1. 1620156Domain d4ja8a_: 4ja8 A: [202723]
        automated match to d4ja8b_
        complexed with 1k9, ca, gol, ndp; mutant
      2. 1620157Domain d4ja8b_: 4ja8 B: [197105]
        automated match to d1lwda_
        complexed with 1k9, ca, gol, ndp; mutant
    4. Domains for 4kzo:
      1. 1620161Domain d4kzoa_: 4kzo A: [224533]
        automated match to d3inmb_
        complexed with akg, ca, edo, nap; mutant
      2. 1620162Domain d4kzob_: 4kzo B: [224534]
        automated match to d3inmb_
        complexed with akg, ca, edo, nap; mutant
      3. 1620163Domain d4kzoc_: 4kzo C: [224535]
        automated match to d3inmb_
        complexed with akg, ca, edo, nap; mutant
    5. Domains for 4l03:
      1. 1620158Domain d4l03a_: 4l03 A: [224536]
        automated match to d3inmb_
        complexed with akg, ca, edo, nap; mutant
      2. 1620159Domain d4l03b_: 4l03 B: [224537]
        automated match to d3inmb_
        complexed with akg, ca, edo, nap; mutant
      3. 1620160Domain d4l03c_: 4l03 C: [224538]
        automated match to d3inmb_
        complexed with akg, ca, edo, nap; mutant
    6. Domains for 4l04:
      1. 1620176Domain d4l04a_: 4l04 A: [240460]
        automated match to d4l04b_
        complexed with akg, ca, nap; mutant
      2. 1620177Domain d4l04b_: 4l04 B: [235250]
        automated match to d1t0la_
        complexed with akg, ca, nap; mutant
      3. 1620178Domain d4l04c_: 4l04 C: [240461]
        automated match to d4l04b_
        complexed with akg, ca, nap; mutant
      4. 1620179Domain d4l04d_: 4l04 D: [240462]
        automated match to d4l04b_
        complexed with akg, ca, nap; mutant
      5. 1620180Domain d4l04e_: 4l04 E: [240463]
        automated match to d4l04b_
        complexed with akg, ca, nap; mutant
      6. 1620181Domain d4l04f_: 4l04 F: [240464]
        automated match to d4l04b_
        complexed with akg, ca, nap; mutant
    7. Domains for 4l06:
      1. 1620170Domain d4l06a_: 4l06 A: [224539]
        automated match to d3inmb_
        complexed with akg, ca, nap; mutant
      2. 1620171Domain d4l06b_: 4l06 B: [224540]
        automated match to d3inmb_
        complexed with akg, ca, nap; mutant
      3. 1620172Domain d4l06c_: 4l06 C: [224541]
        automated match to d3inmb_
        complexed with akg, ca, nap; mutant
      4. 1620173Domain d4l06d_: 4l06 D: [224542]
        automated match to d3inmb_
        complexed with akg, ca, nap; mutant
      5. 1620174Domain d4l06e_: 4l06 E: [224543]
        automated match to d3inmb_
        complexed with akg, ca, nap; mutant
      6. 1620175Domain d4l06f_: 4l06 F: [224544]
        automated match to d3inmb_
        complexed with akg, ca, nap; mutant
    8. Domains for 4umx:
      1. 1620164Domain d4umxa_: 4umx A: [261171]
        automated match to d4l03c_
        complexed with gol, nap, vvs
      2. 1620165Domain d4umxb_: 4umx B: [261172]
        automated match to d4l03c_
        complexed with gol, nap, vvs
    9. Domain for 4umy:
  12. 1620184Mouse (Mus musculus) [TaxId:10090] [187557] (2 PDB entries)
    1. Domains for 2cmj:
      1. 1620185Domain d2cmja_: 2cmj A: [163446]
        automated match to d1t09a_
        complexed with nap
      2. 1620186Domain d2cmjb_: 2cmj B: [163447]
        automated match to d1t09a_
        complexed with nap
    2. Domains for 2cmv:
      1. 1620187Domain d2cmva_: 2cmv A: [163454]
        automated match to d1t09a_
        complexed with cd, flc, nap
      2. 1620188Domain d2cmvb_: 2cmv B: [163455]
        automated match to d1t09a_
        complexed with cd, flc, nap
  13. 1620189Mycobacterium tuberculosis [TaxId:1773] [193947] (1 PDB entry)
  14. 1620192Shewanella oneidensis [TaxId:211586] [194175] (8 PDB entries)
    1. Domain for 3vkz:
    2. Domain for 3vl2:
    3. Domain for 3vl3:
    4. Domain for 3vl4:
    5. Domain for 3vl6:
    6. Domain for 3vl7:
    7. Domain for 3vmj:
    8. Domain for 3vml:
  15. 1620201Sinorhizobium meliloti [TaxId:266834] [226269] (1 PDB entry)
  16. 1620204Thale cress (Arabidopsis thaliana) [TaxId:3702] [256054] (1 PDB entry)
  17. 1620209Thermus thermophilus HB8 [TaxId:300852] [192453] (1 PDB entry)
  18. 1620214Thermus thermophilus [TaxId:274] [189081] (6 PDB entries)
    1. Domain for 2y3z:
    2. Domains for 2y40:
      1. 1620224Domain d2y40a_: 2y40 A: [170581]
        automated match to d1g2ua_
        complexed with mn
      2. 1620225Domain d2y40b_: 2y40 B: [170582]
        automated match to d1g2ua_
        complexed with mn
    3. Domains for 2y41:
      1. 1620216Domain d2y41a_: 2y41 A: [170583]
        automated match to d1g2ua_
        complexed with ipm, mn
      2. 1620217Domain d2y41b_: 2y41 B: [170584]
        automated match to d1g2ua_
        complexed with ipm, mn
    4. Domains for 2y42:
      1. 1620220Domain d2y42a_: 2y42 A: [170585]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
      2. 1620221Domain d2y42b_: 2y42 B: [170586]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
      3. 1620222Domain d2y42c_: 2y42 C: [170587]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
      4. 1620223Domain d2y42d_: 2y42 D: [170588]
        automated match to d1g2ua_
        complexed with bcn, mn, nad
    5. Domain for 2ztw:
    6. Domains for 4wuo:
      1. 1620218Domain d4wuoa_: 4wuo A: [261027]
        automated match to d2y3za_
        complexed with eoh, gol, ipm, k, mn, nad; mutant
      2. 1620219Domain d4wuob_: 4wuo B: [261028]
        automated match to d2y3za_
        complexed with eoh, gol, ipm, k, mn, nad; mutant

More info for Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases

Timeline for Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases: