SCOPe 2.03: Protein: automated matches

Lineage for Protein: automated matches

Root: SCOPe 2.03
Class c: Alpha and beta proteins (a/b) [51349] (147 folds)

Fold c.77: Isocitrate/Isopropylmalate dehydrogenase-like [53658] (1 superfamily)
consists of two intertwined (sub)domains related by pseudo dyad; duplication
3 layers: a/b/a; single mixed beta-sheet of 10 strands, order 213A945867 (A=10); strands from 5 to 9 are antiparallel to the rest

Superfamily c.77.1: Isocitrate/Isopropylmalate dehydrogenase-like [53659] (6 families)
the constituent families form similar dimers
Family c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases [53660] (4 proteins)
the active site is between the two identical subunits
Protein automated matches [190072] (18 species)
not a true protein

Species:

Acidithiobacillus thiooxidans [TaxId:930] [187607] (1 PDB entry)
- Domains for 2d4v:
  1. Domain d2d4va_: 2d4v A: [163577]
    automated match to d1isoa_
    complexed with flc, nad
  2. Domain d2d4vb_: 2d4v B: [163578]
    automated match to d1isoa_
    complexed with flc, nad
  3. Domain d2d4vc_: 2d4v C: [163579]
    automated match to d1isoa_
    complexed with flc, nad
  4. Domain d2d4vd_: 2d4v D: [163580]
    automated match to d1isoa_
    complexed with flc, nad
Archaeoglobus fulgidus [TaxId:2234] [187335] (1 PDB entry)
- Domains for 2iv0:
  1. Domain d2iv0a_: 2iv0 A: [165706]
    automated match to d1ai2a_
    complexed with cl, zn
  2. Domain d2iv0b_: 2iv0 B: [165707]
    automated match to d1ai2a_
    complexed with cl, zn
Bacillus coagulans [TaxId:1398] [186792] (2 PDB entries)
1. Domains for 1v53:
  1. Domain d1v53a_: 1v53 A: [119836]
    automated match to d2ayqb_
  2. Domain d1v53b_: 1v53 B: [119837]
    automated match to d2ayqb_
2. Domains for 1v5b:
  1. Domain d1v5ba_: 1v5b A: [161828]
    automated match to d2ayqb_
    complexed with so4; mutant
  2. Domain d1v5bb_: 1v5b B: [161829]
    automated match to d2ayqb_
    complexed with so4; mutant
  3. Domain d1v5bc_: 1v5b C: [161830]
    automated match to d2ayqb_
    complexed with so4; mutant
  4. Domain d1v5bd_: 1v5b D: [161831]
    automated match to d2ayqb_
    complexed with so4; mutant
  5. Domain d1v5be_: 1v5b E: [161832]
    automated match to d2ayqb_
    complexed with so4; mutant
  6. Domain d1v5bf_: 1v5b F: [161833]
    automated match to d2ayqb_
    complexed with so4; mutant
  7. Domain d1v5bg_: 1v5b G: [161834]
    automated match to d2ayqb_
    complexed with so4; mutant
  8. Domain d1v5bh_: 1v5b H: [161835]
    automated match to d2ayqb_
    complexed with so4; mutant
Bacillus sp. [TaxId:1409] [233761] (1 PDB entry)
- Domain for 3u1h:
  - Domain d3u1ha_: 3u1h A: [233762]
    automated match to d3vmja_
Baker's yeast (Saccharomyces cerevisiae) [TaxId:4932] [225478] (4 PDB entries)
1. Domains for 2qfv:
  1. Domain d2qfva_: 2qfv A: [205785]
    automated match to d4hcxb_
    complexed with nap
  2. Domain d2qfvb_: 2qfv B: [205786]
    automated match to d4hcxb_
    complexed with nap
  3. Domain d2qfvc_: 2qfv C: [205787]
    automated match to d4hcxb_
    complexed with nap
  4. Domain d2qfvd_: 2qfv D: [205788]
    automated match to d4hcxb_
    complexed with nap
2. Domains for 2qfw:
  1. Domain d2qfwa_: 2qfw A: [205789]
    automated match to d4hcxb_
    complexed with ict
  2. Domain d2qfwb_: 2qfw B: [205790]
    automated match to d4hcxb_
    complexed with ict
  3. Domain d2qfwc_: 2qfw C: [205791]
    automated match to d4hcxb_
    complexed with ict
  4. Domain d2qfwd_: 2qfw D: [205792]
    automated match to d4hcxb_
    complexed with ict
  5. Domain d2qfwe_: 2qfw E: [205793]
    automated match to d4hcxb_
    complexed with ict
  6. Domain d2qfwf_: 2qfw F: [205794]
    automated match to d4hcxb_
    complexed with ict
3. Domains for 2qfx:
  1. Domain d2qfxa_: 2qfx A: [205795]
    automated match to d4hcxb_
    complexed with akg, ca, ndp
  2. Domain d2qfxb_: 2qfx B: [205796]
    automated match to d4hcxb_
    complexed with akg, ca, ndp
  3. Domain d2qfxc_: 2qfx C: [205797]
    automated match to d4hcxb_
    complexed with akg, ca, ndp
  4. Domain d2qfxd_: 2qfx D: [205798]
    automated match to d4hcxb_
    complexed with akg, ca, ndp
  5. Domain d2qfxe_: 2qfx E: [205799]
    automated match to d4hcxb_
    complexed with akg, ca, ndp
  6. Domain d2qfxf_: 2qfx F: [205800]
    automated match to d4hcxb_
    complexed with akg, ca, ndp
4. Domains for 2qfy:
  1. Domain d2qfya_: 2qfy A: [205801]
    automated match to d4hcxb_
    complexed with akg
  2. Domain d2qfyb_: 2qfy B: [205802]
    automated match to d4hcxb_
    complexed with akg
  3. Domain d2qfyc_: 2qfy C: [205803]
    automated match to d4hcxb_
    complexed with akg
  4. Domain d2qfyd_: 2qfy D: [205804]
    automated match to d4hcxb_
    complexed with akg
  5. Domain d2qfye_: 2qfy E: [205805]
    automated match to d4hcxb_
    complexed with akg
  6. Domain d2qfyf_: 2qfy F: [205806]
    automated match to d4hcxb_
    complexed with akg
Burkholderia pseudomallei [TaxId:28450] [188497] (1 PDB entry)
- Domain for 3dms:
  - Domain d3dmsa_: 3dms A: [174063]
    automated match to d1ai2a_
Burkholderia thailandensis [TaxId:271848] [193254] (1 PDB entry)
- Domains for 4iwh:
  1. Domain d4iwha_: 4iwh A: [202678]
    automated match to d4iwhb_
    complexed with mg
  2. Domain d4iwhb_: 4iwh B: [193255]
    automated match to d1a05a_
    complexed with mg
Campylobacter jejuni [TaxId:197] [189804] (2 PDB entries)
1. Domain for 3udo:
  - Domain d3udoa_: 3udo A: [186238]
    automated match to d1cm7a_
    complexed with edo, so4
2. Domains for 3udu:
  1. Domain d3udua_: 3udu A: [186239]
    automated match to d1cm7a_
    complexed with cl, edo
  2. Domain d3udub_: 3udu B: [186240]
    automated match to d1cm7a_
    complexed with cl, edo
  3. Domain d3uduc_: 3udu C: [186241]
    automated match to d1cm7a_
    complexed with cl, edo
  4. Domain d3udud_: 3udu D: [186242]
    automated match to d1cm7a_
    complexed with cl, edo
  5. Domain d3udue_: 3udu E: [186243]
    automated match to d1cm7a_
    complexed with cl, edo
  6. Domain d3uduf_: 3udu F: [186244]
    automated match to d1cm7a_
    complexed with cl, edo
  7. Domain d3udug_: 3udu G: [186245]
    automated match to d1cm7a_
    complexed with cl, edo
  8. Domain d3uduh_: 3udu H: [186246]
    automated match to d1cm7a_
    complexed with cl, edo
Escherichia coli K-12 [TaxId:83333] [189313] (1 PDB entry)
- Domains for 3lcb:
  1. Domain d3lcbc_: 3lcb C: [180177]
    automated match to d1p8fa_
    complexed with amp, atp, mg
  2. Domain d3lcbd_: 3lcb D: [180178]
    automated match to d1p8fa_
    complexed with amp, atp, mg
Escherichia coli [TaxId:562] [193425] (5 PDB entries)
1. Domain for 4aja:
  - Domain d4ajaa_: 4aja A: [194429]
    automated match to d1pb1a_
    complexed with ca, ict, so4, tap
2. Domain for 4ajb:
  - Domain d4ajba_: 4ajb A: [218932]
    automated match to d4ajca_
    complexed with ict, mg, so4, tap; mutant
3. Domain for 4ajc:
  - Domain d4ajca_: 4ajc A: [193426]
    automated match to d1pb1a_
    complexed with a2p, akg, ca, so4; mutant
4. Domain for 4ajr:
  - Domain d4ajra_: 4ajr A: [219005]
    automated match to d4ajca_
    complexed with akg, mg, nap, nmn; mutant
5. Domain for 4ajs:
  - Domain d4ajsa_: 4ajs A: [219006]
    automated match to d4ajca_
    complexed with a2p, ict, mg, nmn, so4; mutant
Escherichia coli [TaxId:833333] [194427] (1 PDB entry)
- Domain for 4aj3:
  - Domain d4aj3a_: 4aj3 A: [194428]
    automated match to d1pb1a_
    complexed with ca, ict, nap
Human (Homo sapiens) [TaxId:9606] [189131] (7 PDB entries)
1. Domains for 3inm:
  1. Domain d3inma_: 3inm A: [178460]
    automated match to d1t09a_
    protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
  2. Domain d3inmb_: 3inm B: [178461]
    automated match to d1t09a_
    protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
  3. Domain d3inmc_: 3inm C: [178462]
    automated match to d1t09a_
    protein/RNA complex; complexed with akg, ca, gol, na, ndp; mutant
2. Domains for 3map:
  1. Domain d3mapa_: 3map A: [180990]
    automated match to d1t09a_
    complexed with ict, nap; mutant
  2. Domain d3mapb_: 3map B: [180991]
    automated match to d1t09a_
    complexed with ict, nap; mutant
3. Domains for 4ja8:
  1. Domain d4ja8a_: 4ja8 A: [202723]
    automated match to d4ja8b_
    complexed with 1k9, ca, gol, ndp; mutant
  2. Domain d4ja8b_: 4ja8 B: [197105]
    automated match to d1lwda_
    complexed with 1k9, ca, gol, ndp; mutant
4. Domains for 4kzo:
  1. Domain d4kzoa_: 4kzo A: [224533]
    automated match to d3inmb_
    complexed with akg, ca, edo, nap; mutant
  2. Domain d4kzob_: 4kzo B: [224534]
    automated match to d3inmb_
    complexed with akg, ca, edo, nap; mutant
  3. Domain d4kzoc_: 4kzo C: [224535]
    automated match to d3inmb_
    complexed with akg, ca, edo, nap; mutant
5. Domains for 4l03:
  1. Domain d4l03a_: 4l03 A: [224536]
    automated match to d3inmb_
    complexed with akg, ca, edo, nap; mutant
  2. Domain d4l03b_: 4l03 B: [224537]
    automated match to d3inmb_
    complexed with akg, ca, edo, nap; mutant
  3. Domain d4l03c_: 4l03 C: [224538]
    automated match to d3inmb_
    complexed with akg, ca, edo, nap; mutant
6. Domain for 4l04:
  - Domain d4l04b_: 4l04 B: [235250]
    automated match to d1t0la_
    complexed with akg, ca, nap; mutant
7. Domains for 4l06:
  1. Domain d4l06a_: 4l06 A: [224539]
    automated match to d3inmb_
    complexed with akg, ca, nap; mutant
  2. Domain d4l06b_: 4l06 B: [224540]
    automated match to d3inmb_
    complexed with akg, ca, nap; mutant
  3. Domain d4l06c_: 4l06 C: [224541]
    automated match to d3inmb_
    complexed with akg, ca, nap; mutant
  4. Domain d4l06d_: 4l06 D: [224542]
    automated match to d3inmb_
    complexed with akg, ca, nap; mutant
  5. Domain d4l06e_: 4l06 E: [224543]
    automated match to d3inmb_
    complexed with akg, ca, nap; mutant
  6. Domain d4l06f_: 4l06 F: [224544]
    automated match to d3inmb_
    complexed with akg, ca, nap; mutant
Mouse (Mus musculus) [TaxId:10090] [187557] (2 PDB entries)
1. Domains for 2cmj:
  1. Domain d2cmja_: 2cmj A: [163446]
    automated match to d1t09a_
    complexed with nap
  2. Domain d2cmjb_: 2cmj B: [163447]
    automated match to d1t09a_
    complexed with nap
2. Domains for 2cmv:
  1. Domain d2cmva_: 2cmv A: [163454]
    automated match to d1t09a_
    complexed with cd, flc, nap
  2. Domain d2cmvb_: 2cmv B: [163455]
    automated match to d1t09a_
    complexed with cd, flc, nap
Mycobacterium tuberculosis [TaxId:1773] [193947] (1 PDB entry)
- Domains for 4hcx:
  1. Domain d4hcxa_: 4hcx A: [202413]
    automated match to d4hcxb_
    complexed with cl, mn, nap
  2. Domain d4hcxb_: 4hcx B: [193948]
    automated match to d1lwda_
    complexed with cl, mn, nap
Shewanella oneidensis [TaxId:211586] [194175] (8 PDB entries)
1. Domain for 3vkz:
  - Domain d3vkza_: 3vkz A: [217907]
    automated match to d3vl3a_
    complexed with ca, cl, ipm
2. Domain for 3vl2:
  - Domain d3vl2a_: 3vl2 A: [217908]
    automated match to d3vl3a_
    complexed with ca, cl, ipm
3. Domain for 3vl3:
  - Domain d3vl3a_: 3vl3 A: [195909]
    automated match to d1cnza_
    complexed with ca, cl, ipm
4. Domain for 3vl4:
  - Domain d3vl4a_: 3vl4 A: [217909]
    automated match to d3vl3a_
    complexed with ca, cl, ipm
5. Domain for 3vl6:
  - Domain d3vl6a_: 3vl6 A: [217910]
    automated match to d3vl3a_
    complexed with ca, cl, ipm
6. Domain for 3vl7:
  - Domain d3vl7a_: 3vl7 A: [217911]
    automated match to d3vl3a_
    complexed with ca, cl, ipm
7. Domain for 3vmj:
  - Domain d3vmja_: 3vmj A: [197351]
    automated match to d1cnza_
    complexed with cl, ipm, mg
8. Domain for 3vml:
  - Domain d3vmla_: 3vml A: [194176]
    automated match to d1cnza_
    complexed with cl, ipm, mg
Sinorhizobium meliloti [TaxId:266834] [226269] (1 PDB entry)
- Domains for 3us8:
  1. Domain d3us8a_: 3us8 A: [217506]
    automated match to d4ja8b_
    complexed with so4
  2. Domain d3us8b_: 3us8 B: [217507]
    automated match to d4ja8b_
    complexed with so4
Thermus thermophilus [TaxId:274] [189081] (5 PDB entries)
1. Domain for 2y3z:
  - Domain d2y3za_: 2y3z A: [170580]
    automated match to d1g2ua_
    complexed with 2pe, gol, trs
2. Domains for 2y40:
  1. Domain d2y40a_: 2y40 A: [170581]
    automated match to d1g2ua_
    complexed with mn
  2. Domain d2y40b_: 2y40 B: [170582]
    automated match to d1g2ua_
    complexed with mn
3. Domains for 2y41:
  1. Domain d2y41a_: 2y41 A: [170583]
    automated match to d1g2ua_
    complexed with ipm, mn
  2. Domain d2y41b_: 2y41 B: [170584]
    automated match to d1g2ua_
    complexed with ipm, mn
4. Domains for 2y42:
  1. Domain d2y42a_: 2y42 A: [170585]
    automated match to d1g2ua_
    complexed with bcn, mn, nad
  2. Domain d2y42b_: 2y42 B: [170586]
    automated match to d1g2ua_
    complexed with bcn, mn, nad
  3. Domain d2y42c_: 2y42 C: [170587]
    automated match to d1g2ua_
    complexed with bcn, mn, nad
  4. Domain d2y42d_: 2y42 D: [170588]
    automated match to d1g2ua_
    complexed with bcn, mn, nad
5. Domain for 2ztw:
  - Domain d2ztwa_: 2ztw A: [171518]
    automated match to d1g2ua_
    complexed with dei, mg, nad
Thermus thermophilus [TaxId:300852] [192453] (1 PDB entry)
- Domains for 4f7i:
  1. Domain d4f7ia_: 4f7i A: [192421]
    automated match to d1xaaa_
    complexed with eoh, gol, ipm, k, mn, mpo, nad
  2. Domain d4f7ib_: 4f7i B: [192422]
    automated match to d1xaaa_
    complexed with eoh, gol, ipm, k, mn, mpo, nad
  3. Domain d4f7ic_: 4f7i C: [192423]
    automated match to d1xaaa_
    complexed with eoh, gol, ipm, k, mn, mpo, nad
  4. Domain d4f7id_: 4f7i D: [192424]
    automated match to d1xaaa_
    complexed with eoh, gol, ipm, k, mn, mpo, nad

More info for Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases

Timeline for Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases:

Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases first appeared in SCOPe 2.01
Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases appears in SCOPe 2.02
Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases appears in SCOPe 2.04
Protein automated matches from c.77.1.1: Dimeric isocitrate & isopropylmalate dehydrogenases appears in the current release, SCOPe 2.08